Table 2:
Properties of the fluorogenic RNA-based sensors discussed in this review
| Sensor | Target | EC50 (μM) | Fold activation* | Tested in bacteria | Ref. |
|---|---|---|---|---|---|
| Allosteric Spinach | ADP | 270 | 20 | Yes | [58] |
| Allosteric Spinach | SAM | 120 | 25 | Yes | [58] |
| Allosteric Spinach | Adenosine | 44 | 20 | No | [58] |
| Allosteric Spinach | Guanine | 1.5 | 32 | No | [58] |
| Allosteric Spinach | GTP | 7,700 | 15 | No | [58] |
| Allosteric Spinach | c-di-GMP | 0.23 | (37°C) ~6 | Yes | [59] |
| Allosteric Spinach | c-AMP-GMP | 4.2 | (37°C) ~8 | Yes | [59] |
| Allosteric Spinach | c-di-GMP | ~2 | >30 | No | [60] |
| Allosteric Spinach | c-di-GMP | 0.005 – 0.4 | (37°C) 5 – 7 | Yes | [66] |
| Allosteric Spinach | c-di-AMP | 3.4 & 29 | 2.4 & 9.1 | Yes | [67] |
| Allosteric Spinach | Streptavidin | <0.2 | 10.3 | Yes | [70] |
| Allosteric Spinach | MCP coat protein | ~0.6 | 41.7 | Yes | [70] |
| Allosteric Spinach | Thrombin | ~0.2 | 6.9 | No | [70] |
| Allosteric Broccoli | c-di-GMP | N/A | ~7 | No | [48] |
| Allosteric Broccoli | 5-hydroxytryptophan | N/A | >5 | Yes | [69] |
| Allosteric Broccoli | 3, 4-dihydroxy phenylalanine | N/A | >5 | Yes | [69] |
| Spinach riboswitch | TPP | 9.0 | 15.9 | Yes | [74] |
| Spinach riboswitch | SAM | 1.2 | 8.8 | No | [74] |
| Spinach riboswitch | Guanine | 0.19 | 6.2 | No | [74] |
| Spinach riboswitch | Adenine | 10 | 4.3 | No | [74] |
| CHARGE | RNA | ~0.001 | 2.2 | Yes | [84] |
| Spinach-Mango FRET | SAM | 17 | <2 | No | [111] |
N/A: not available;
Fold activation indicates the in vitro sensor performance after adding target as measured at 25°C.