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. Author manuscript; available in PMC: 2020 May 15.
Published in final edited form as: Methods. 2019 Jan 17;161:24–34. doi: 10.1016/j.ymeth.2019.01.008

Table 2:

Properties of the fluorogenic RNA-based sensors discussed in this review

Sensor Target EC50 (μM) Fold activation* Tested in bacteria Ref.
Allosteric Spinach ADP 270 20 Yes [58]
Allosteric Spinach SAM 120 25 Yes [58]
Allosteric Spinach Adenosine 44 20 No [58]
Allosteric Spinach Guanine 1.5 32 No [58]
Allosteric Spinach GTP 7,700 15 No [58]
Allosteric Spinach c-di-GMP 0.23 (37°C) ~6 Yes [59]
Allosteric Spinach c-AMP-GMP 4.2 (37°C) ~8 Yes [59]
Allosteric Spinach c-di-GMP ~2 >30 No [60]
Allosteric Spinach c-di-GMP 0.005 – 0.4 (37°C) 5 – 7 Yes [66]
Allosteric Spinach c-di-AMP 3.4 & 29 2.4 & 9.1 Yes [67]
Allosteric Spinach Streptavidin <0.2 10.3 Yes [70]
Allosteric Spinach MCP coat protein ~0.6 41.7 Yes [70]
Allosteric Spinach Thrombin ~0.2 6.9 No [70]
Allosteric Broccoli c-di-GMP N/A ~7 No [48]
Allosteric Broccoli 5-hydroxytryptophan N/A >5 Yes [69]
Allosteric Broccoli 3, 4-dihydroxy phenylalanine N/A >5 Yes [69]
Spinach riboswitch TPP 9.0 15.9 Yes [74]
Spinach riboswitch SAM 1.2 8.8 No [74]
Spinach riboswitch Guanine 0.19 6.2 No [74]
Spinach riboswitch Adenine 10 4.3 No [74]
CHARGE RNA ~0.001 2.2 Yes [84]
Spinach-Mango FRET SAM 17 <2 No [111]

N/A: not available;

*

Fold activation indicates the in vitro sensor performance after adding target as measured at 25°C.