Table 2. Locations of genes and other features in the mitochondrial genome of Paragonimus ohirai (14,818 bp).

Gene	Position(5′>3′)	Length		Codon		tRNAanti-codon	Identification of tRNA by	Int. seq.length (bp)
		bp	aa	start	stop
cox3	1–645	645	214	ATG	TAG			+3
tRNAHis	649–717	69				GTG	AR, SE, DO	0
cob	718–1,836	1,119	372	ATG	TAG			+5
nad4L	1,842–2,105	264	87	ATG	TAG			−40
nad4	2,066–3,325	1,260	419	ATG	TAG			+11
tRNAGln	3,337–3,398	62				TTG	AR	+6
tRNAPhe	3,405–3,470	66				GAA	AR, SE, DO	0
tRNAMet	3,471–3,535	65				CAT	AR, SE, DO	0
atp6	3,536–4,051	516	171	ATG	TAG			+2
nad2	4,054–4,920	867	288	ATG	TAG			+7
tRNAVal	4,928–4,991	64				TAC	AR, SE, DO	+2
tRNAAla	4,994–5,059	66				TGC	AR, SE, DO	+6
tRNAAsp	5,066–5,132	67				GTC	AR, SE, DO	0
nad1	5,133–6,038	906	301	ATG	TAG			+11
tRNAAsn	6,049–6,119	70				GTT	AR, SE, DO	−2
tRNAPro	6,118–6,184	67				TGG		+7
ttRNAIle	6,192–6,254	63				GAT		+11
tRNALys	6,266–6,329	64				CTT	AR, SE, DO	0
nad3	6,330–6,686	357	118	ATG	TAG			+7
tRNASer1(AGN)a	6,694–6,755	62				GCT	AR	+7
tRNATrp	6,763–6,827	65				TCA	AR, SE, DO	+3
cox1	6,831–8,363	1,533	510	ATG	TAG			−1
tRNAThr	8,363–8,428	66				TGT	AR, SE, DO	0
16S RNA	8,429–9,402	974						0
tRNACys	9,403–9,468	66				GCA	AR, DO	0
12S RNA	9,469–10,204	736						0
cox2	10,205–10,804	600	199	ATG	TAG			−1
nad6	10,804–11,256	453	150	GTG	TAG			+3
tRNATyr	11,260–1,1,320	61				GTA	AR, DO	+11
tRNALeu1(CUN)	11,332–11,396	65				TAG	AR, DO	−3
tRNASer1(UCN)a	11,394–11,457	64				TGA	AR	+18
tRNALeu2(UUR)	11,476–11,538	63				TAA	AR, SE, DO	+11
tRNAArg	11,540–11,618	69				TCG	AR, DO	0
nad5	11,619–13,202	1,584	527	GTG	TAA			+10
tRNAGly	13,213–13,284	72				TCC	AR, SE, DO	+28
LR1	13,313–13,604	292						+8
tRNAGlu	13,613–13,681	69				TTC	SE, DO	−29
LR2	13,653–13,944	292						+15
STR1	13,960–14,076	117						0
STR2	14,077–14,193	117						0
STR3	14,194–14,310	117						0
STR4	14,311–14,426	117						0
STR5	14,427–14,544	117						0
STR6	14,545–14,661	117						0
unique seq	14,662–14,818	157						0

Notes.

bp

basepair

aa

amino acid

Int. seq.

intergenic sequence

(+, number of nucleotides before start of the following gene; −, number of nucleotides overlapping with the following gene or other feature); LR, Long repeat; STR, short tandem repeat. Transfer RNAs (tRNA) found by software used in this study (SE] tRNAscan-SE 1.21 (Lowe & Eddy, 1997) AR, ARWEN Alpha version (Laslett & Canback, 2008); DO, DOGMA (Wyman, Jansen & Boore, 2004) with slight amendment own by our own determination.

^aIndicating tRNAs lacking DHU-arm.