Table 3. Base composition and related statistics (skewness evaluation) for protein-coding genes and ribosomal regions of the mtDNA ofParagonimus ohiraiand otherParagonimusspecies, and means and standard deviations of base composition of all species included in the study.
Sequence | Length(nt)* | A | T | G | C | A+T | AT-skew | G+C | GC-skew | |
---|---|---|---|---|---|---|---|---|---|---|
Protein-coding | Pohi-Kinosaki-JP | 10,104 | 17.00 | 46.00 | 26.17 | 10.83 | 63.00 | −0.46 | 37.00 | 0.41 |
Pwes(2n)-Haenam-KR | 10,101 | 13.40 | 38.21 | 30.61 | 17.77 | 51.61 | −0.48 | 48.39 | 0.26 | |
Pwes(3n)-Bogil-KR | 10,101 | 13.33 | 38.25 | 30.61 | 17.81 | 51.58 | −0.48 | 48.42 | 0.26 | |
Pwes-TypeI-IN | 10,104 | 14.89 | 40.50 | 29.36 | 15.25 | 55.39 | −0.46 | 44.61 | 0.32 | |
Pwes-AP-IN | 10,140 | 14.72 | 40.40 | 29.58 | 15.30 | 55.12 | −0.46 | 44.88 | 0.32 | |
Phet_China | 10,101 | 14.93 | 43.91 | 28.18 | 12.98 | 58.84 | −0.49 | 41.16 | 0.37 | |
Pkell | 10,098 | 15.19 | 44.78 | 27.73 | 12.30 | 59.97 | −0.49 | 40.30 | 0.38 | |
Mean, all included species | 17.58 | 46.04 | 25.91 | 10.41 | 63.64 | −0.45 | 36.38 | 0.43 | ||
S.D. all included species | 3.5 | 2.86 | 2.85 | 2.49 | 4.93 | 0.07 | 4.91 | 0.07 | ||
Ribosomal RNA coding | Pohi-Kinosaki-JP | 1,710 | 22.92 | 37.19 | 26.90 | 12.98 | 60.01 | −0.23 | 39.99 | 0.35 |
Pwes(2n)-Haenam-KR | 1,732 | 19.11 | 32.62 | 31.12 | 17.15 | 51.73 | −0.26 | 48.27 | 0.29 | |
Pwes(3n)-Bogil-KR | 1,732 | 18.94 | 32.79 | 31.29 | 16.97 | 51.73 | −0.27 | 48.27 | 0.30 | |
Pwes-TypeI-IN | 1,729 | 20.24 | 35.11 | 29.84 | 14.81 | 55.35 | −0.27 | 44.65 | 0.34 | |
Pwes-AP-IN | 1,721 | 20.22 | 34.63 | 30.16 | 14.99 | 54.85 | −0.26 | 45.15 | 0.34 | |
Phet China | 1,711 | 20.81 | 37.05 | 28.23 | 13.91 | 57.86 | −0.28 | 42.14 | 0.34 | |
Pkell | 1,711 | 21.33 | 37.52 | 27.47 | 13.68 | 58.85 | −0.28 | 41.15 | 0.33 |
Notes.
- Pohi
- Paragonimus ohirai
- Pwes
- P. westermani
- Phet
- P. heterotremus
- Pkell
- P. kellicotti.
- JP
- Japan
- KR
- South Korea
- IN
- India.
- Kinosaki
- Kinosaki locality, Japan
- AP
- Arunachal Pradesh locality, India (see Table S1)
High A and T nucleotide use (17.00% and 46.00%) in P. ohirai is bolded. S.D. standard deviation nt nucleotide.
The overlap between nad4L and nad4 is counted twice in this calculation.