TABLE 2.
Thirteen component networks of KlebNeta
| Code | Description | No. of genes |
No. of links |
|---|---|---|---|
| KP-CC | Inferred links by cocitation across PubMed Central articles for K. pneumoniae biology | 504 | 5,505 |
| KP-DP | Inferred links by correlation of protein domain profiles of K. pneumoniae coding genes | 3,470 | 17,402 |
| KP-GN | Inferred links by neighborhood of K. pneumoniae orthologs in bacterial genomes | 4,533 | 94,499 |
| KP-PG | Phylogenetic profiling and coinheritance patterns of K. pneumoniae ortholog genes across organisms | 2,492 | 44,496 |
| EC-CC | Associalogs of inferred links by cocitation across PubMed Central articles for E. coli biology | 1,641 | 30,464 |
| EC-CX | Associalogs of inferred links by coexpression across gene expression profiles in the GEO database for E. coli | 2,946 | 42,489 |
| EC-LC | Associalogs of bacterial protein-protein interactions derived from literature curation of small-scale analysis for E. coli | 646 | 840 |
| PA-CC | Associalogs of inferred links by cocitation across PubMed Central articles for P. aeruginosa biology | 1,187 | 12,181 |
| PA-CX | Associalogs of inferred links by coexpression across gene expression profiles in the GEO database for P. aeruginosa | 1,433 | 6,356 |
| SC-CC | Associalogs of inferred links by cocitation across PubMed Central articles for S. cerevisiae biology | 495 | 4,294 |
| SC-CX | Associalogs of inferred links by coexpression across gene expression profiles in the GEO database for S. cerevisiae | 630 | 9,513 |
| SC-LC | Associalogs of bacterial PPI derived from literature curation of small-scale analysis for S. cerevisiae | 435 | 896 |
| BA-HT | Associalogs of bacterial PPI derived from high-throughput data of E. coli, S. aureus, and M. pneumoniae | 2,415 | 23,493 |
| KlebNet | Integrated network | 4,674 | 160,450 |
a
KP, K. pneumoniae; EC, E. coli; PA, P. aeruginosa; SC, S. cerevisiae; BA, multiple bacterial species; CC, cocitation; DP, domain profile; GN, gene neighborhood; PG, phylogenetic profiles; CX, coexpression; LC, literature-curated protein-protein interactions; HT, high-throughput protein-protein interactions.