Table 2.
List of selected genes under positive selection grouped by MapMan BIN functional category
| BIN | Total PSG | DE* | Genes |
|---|---|---|---|
| 1 (Photosynthesis) | 4 | 3 | LHCB3 (ω = 7.2), LHCA4 (ω = 6.46), GAPB (ω = 5.0) |
| 3 (Major carbohydrate metabolism) | 2 | 0 | TPS6 (ω = 133.7), TPS9 (ω = 3.6) |
| 7 (Glycolysis) | 2 | 1 | PGD2 (ω = 1.2), EMB3119 (ω = 1.1) |
| 10 (Cell wall) | 4 | 2 | PME34 (ω = 12.5), CESA6 (ω = 2.4) |
| 11 (Lipid metabolism) | 5 | 1 | MGD2 (ω = 14.6), FATA (ω = 11.1) |
| 13 (Amino acid metabolism) | 3 | 0 | HISN3 (ω = 12.0), P5CR (ω = 2.5), ADT2 (ω = 1.6) |
| 16 (Secondary metabolism) | 3 | 1 | FPS2 (ω = 5.3), PSY (ω = 5.3), TT4 (ω = 1.6) |
| 17 (Hormone metabolism) | 2 | 1 | ILL6 (ω = 2.5) |
| 20 (Stress) | 3 | 0 | P58IPK (ω = 1.4), QUA3 (ω = 1.3), Hsp81.4 (ω = 1.0) |
| 26 (Misc) | 8 | 4 | PRX52 (ω = 9.0), PAP27 (ω = 2.9), LPP2 (ω = 2.0), PAP29 (ω = 1.6) |
| 27 (RNA) | 4 | 0 | PCNA2 (ω = 6.6), LIF2 (ω = 3.8), SWA1 (ω = 3.8), FDM1 (ω = 1.2) |
| 28 (DNA) | 2 | 0 | ENDO4 (ω = 8.7) |
| 29 (Protein) | 20 | 4 |
ARA12 (ω = 54.4), AEL1 (ω = 47.2), AUR3 (ω = 17.2), UBC10 (ω = 7.8), PP2A-2 (ω = 6.5), OVA9 (ω = 5.7), BOP1 (ω = 4.3), SWA1 (ω = 3.8), SRP54CP (ω = 1.6), PP2A-4 (ω = 1.4), XBCP3 (ω = 1.2) |
| 30 (Signalling) | 9 | 0 | ACA2 (ω = 12.8), CNX1 (ω = 10.0), CRPK1 (ω = 9.1), GDI1 (ω = 3.1), BEN1 (ω = 2.3), RAN3 (ω = 1.1), CPK1 (ω = 1.0) |
| 31 (Cell) | 5 | 1 | PEX11B (ω = 16.7), KINESIN-13A (ω = 2.9) |
| 33 (Development) | 4 | 0 | SINAT3 (ω = 8.8), SWA1 (ω = 2.8), SCL1 (ω = 2.90) |
| 34 (Transport) | 9 | 0 | PMA (ω = 27.07), ACA2 (ω = 12.8), SUT2 (ω = 6.3), NAP10 (ω = 6.2), CCX5 (ω = 5.8), AZG1 (ω = 4.4), STP1 (ω = 2.6), NRT1.5 (ω = 1.6) |
The inferred ω value for each gene candidate is given in parentheses. Total PSG, total number of genes under positive selection in each BIN category; positively selected genes that are differentially expressed in at least one tissue contrast are indicated in bold.
*DE, number of PSGs that are differentially expressed.