Table 2.
Differential splicing of 10 genes in rice. Genes were first detected using RNA‐Seq and re‐tested using capillary gel electrophoresis (CGE). A p‐value < 0.05 is considered significant
| Gene | AS type | Avg. RPKM expression | RNA‐seq PSI (%L) | CGE PSI (%L) | p‐Valuea | |||
|---|---|---|---|---|---|---|---|---|
| Root | Shoot | Root | Shoot | Root | Shoot | |||
| LOC_Os01g25484, ferrodoxin nitrite reductase | RI | 300 | 131 | 74.2 | 31.7 | 29.9 | 13 | 5e‐05 |
| LOC_Os01g35580, unknown | AS | 55.7 | 34.9 | 44.0 | 66.3 | 49.9 | 66.9 | 2.47e‐04 |
| LOC_Os01g45274, carbonic anhydrase | ES | 171 | 1,380 | 96.8 | 24.3 | 97.4 | 15.4 | 3e‐09 |
| LOC_Os01g51290, protein kinase | RI | 49.6 | 49.9 | 88.4 | 95.1 | 13.3 | 17.2 | 0.03466 |
| LOC_Os03g05390, citrate transporter | RI | 219 | 174 | 86.0 | 96.3 | 86 | 95.5 | 1.2e‐04 |
| LOC_Os12g08260, dehydrogenase E1 | RI | 8.03 | 30.3 | 55.7 | 2.9 | 4.1 | 0.87 | 3e‐05 |
| LOC_Os01g61670, ureidoglycolate hydrolase | DS | 59 | 37.8 | 78.0 | 31.0 | 59 | 37.8 | 1.6e‐09 |
| LOC_Os05g48040, MATE efflux family protein | DS | 7.05 | 6.72 | 88.1 | 100.0 | 89.4 | 88.27 | 0.632 |
| LOC_Os02g05830, ribulose bisphosphate carboxylase | RI | 4.79 | 12.3 | 88.2 | 10.1 | 23.9 | 3.06 | 8e‐04 |
| LOC_Os06g05110, superoxide dismutase | RI | 12.5 | 39.7 | 38.5 | 13.6 | 22.7 | 6.5 | 1.3e‐07 |
a
p‐Value obtained from comparing roots and shoots PSI from CGE.