Table 2.
TCGA | Epstein–Barr virus-infected (EBV) | Microsatellite instability (MSI) |
Genomically stable (GS) |
Chromosomal instability (CIN) |
---|---|---|---|---|
• EBV-positive • Profound hypermethylation • CDKN2A silencing • 80% PIK3CA mutation • PD-L1/2 overexpression • Immune cell signalling • Frequent ARID1A and • BCOR mutations • Fundus and body |
• Hypermutation • DNA hypermethylation • Silencing of MLH1 • Elevated somatic mutations (PIK3CA, 42%; ERBB3, 26%) • Older patients • Fundus, body and antrum |
• Tumours lacking aneuploidy and elevated rates of mutation or hypermethylation • Somatic RHOA and CDH1 mutations • CLDN18–ARHGAP6 or ARHGAP26 fusions • Mostly diffuse subtype |
• Marked aneuploidy • TP53 mutations • Recurrent amplifications of receptor tyrosine kinases (HER2, 24%) • Majority of tumours at the esophagogastric junction |
|
ACRG | MSS/TP53- | MSI | MSS/EMT | MSS/TP53 |
Intact TP53 • MDM2 amplification • EBV infection • Enrichment with PIK3A or ARID1A mutation and cytokine signature in EBV-positive tumours |
• Hypermutation • Silencing of MLH1 • Frequent mutations in KRAS, MTOR, PIK3CA, ASL and ARID1A • Best prognosis |
• CDH1 silencing • Younger patients • Worst prognosis |
• TP53 mutation • Genomic instability • Recurrent amplification (ERBB2, EGFR, GATA6, MYC, CCNE1 and CCND1) |