Table 1.

Depth of coverage of the mitochondrial genome was assessed for whole genome DNA libraries and PCR enriched DNA libraries

	Native DNA samples					PCR enriched DNA samples
Sample	Input DNA (in ng)	Reads*	Mapped reads	Average coverage	Coverage range	Input DNA (in ng)	Reads*	Mapped reads	Average coverage	Coverage range
HL60	212	307 277	888	118	71–139	0.4	314 567	227 279	20 417	3213—47 838
101	144.8	297 624	429	92	47–113	0.4	6135	6105	686	52–2042
102	229.5	96 710	281	39	23–49	0.4	2557	2550	295	54–784
103	207	160 337	390	69	42–82	0.4	4357	4344	507	123–1274
433	176.3	222 357	490	33	15–44	0.4	3431	3423	399	74–1004
441	259.5	258 867	230	37	20–52	0.4	6178	6114	743	180–1555
442	237	235 930	280	70	42–82	0.4	6835	6767	813	201–1789
449	204	179 255	184	15	8–20	0.4	2874	2852	334	80–812
459	234	175 492	230	24	12–33	0.4	4393	4365	487	75–1414

^*Reads reflect the number of reads to pass the quality filter of the basecaller for a particular sample. This is not the total number of reads generated by the sequencing run. For the barcoded PCR enriched samples, this is the number of reads represented by a given barcode.