Table 1. Gene contents in the complete chloroplast genome of A. oxyphylla.
| Category of genes | Group of gene | Name of gene |
|---|---|---|
| Self-replication | Small subunit of ribosome (SSU) | rps2, rps3, rps4, rps7*, rps8, rps11, rps12, rps14, rps15, rps16, rps18, rps19* |
| Large subunit of ribosome (LSU) | rpl2*, rpl14, rpl16, rpl20, rpl22, rpl23*, rpl32, rpl33, rpl36 | |
| DNA-dependent RNA polymerase | rpoA, rpoB, rpoC1, rpoC2 | |
| Ribosomal RNA genes (rRNA) | rrn16S*, rrn5S*, rrn23S*, rrn4.5S* | |
| Translation initiation factor | infA | |
| Transfer RNA genes (tRNA) | trnA-TGC*, trnC-GCA, trnC-ACA, trnD-GTC, trnE-TTC, trnF-GAA, trnG-GCC, trnH-GTG*, trnI-GAT*, trnK-TTT, trnL-TAA, trnL-CAA*, trnL-TAG, trnM-CAT*, trnN-GTT*, trnP-TGG, trnQ-TTG, trnR-TCT, trnR-ACG*, trnS-GCT*, trnS-TGA, trnS-GGA, trnT-GGT, trnT-TGT, trnV-GAC*, trnW-CCA, trnY-GTA | |
| Genes for photosynthesis | Subunits of NADH dehydrogenase | ndhA, ndhB*, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK |
| Large subunit of Rubisco | rbcL | |
| Subunits of photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| Subunits of photosystem I | psaA, psaB, psaC, psaI, psaJ | |
| Subunits of ATP synthase | atpA, atpB, atpE, atpF, atpH, atpI | |
| Subunits of cytochrome | petA, petB, petD, petG, petL, petN | |
| Photosystem I assembly | ycf3, ycf4 | |
| Other genes | Envelope membrane protein | cemA |
| C-type cytochrome synthesis gene | ccsA | |
| Subunit of acetyl-CoA | accD | |
| Protease | clpP | |
| Maturase | matK | |
| Unknown | Conserved open reading frames | orf109, orf138, orf169 |
| Pseudogenes | ycf1, ycf2, ycf68*, orf79, orf1006 |
Note
* indicates a duplicated gene.