SF |
Scaling factor to convert the number of molecules to nanomoles |
Unitless |
|
Fixed |
MV, , |
Volumes of media, single N87 and MCF7 cell |
μL, pL, pL |
100, 3.12, 8.14 |
(14) |
DTN87, DTMCF7
|
Doubling times for N87 and MCF7 cells |
h |
40.1, 33.6 |
(14, 17) |
,
|
Maximum achievable cell-count in a culture well for N87 and GFP-MCF7 cells |
Number |
80, 500, 105,00 |
(17) |
TubTotal
|
Total concentration of intracellular tubulin in each cell |
nM |
65 |
Previously estimated (12) |
,
|
Second-order association and first-order dissociation rates of MMAE binding to tubulin |
1/nM/h, 1/h |
0.0183, 0.545 |
(13,38,39) |
,
|
Second-order association and first-order dissociation rates of T-vc-MMAE binding to HER2 |
1/nM/h, 1/h |
0.03, 0.014 |
(13, 14) |
|
First-order net antibody-HER2 complex internalization rate |
1/h |
0.11 |
(13, 14) |
|
First-order non-specific deconjugation rate of MMAE from ADC |
1/h |
~0 |
Previously estimated to a low value (14) |
DAR |
Initial drug: antibody ratio of T-vc-MMAE |
Unitless |
4.5 |
Experimentally measured (17) |
,
|
Number of HER2 receptors on N87 and GFP-MCF7 cells |
Unitless |
950,000, 52,000 |
Determined in-house (14) |
|
First-order rate of proteases-induced intracellular ADC degradation and MMAE release |
1/h |
0.353 |
(14) |
,
|
First-order influx and efflux rate constants for MMAE from extracellular space to intracellular space |
1/h |
8.33, 0.199 |
(14) |
,
|
First-order killing rates ofMMAE in N87and GFP-MCF7 cells |
1/h |
0.03 (12.3 %), 0.021 (4.1%) |
Estimated |
,
|
Mean intracellular occupancy to tubulin () required to achieve 50% cytotoxicity |
percentage |
98.3 % (19.3%), 96.1% (5.5%) |
Estimated |
,
|
Within-cell variability in KC50 values associated with N87 and GFP-MCF7 cells |
Percentage |
19.2% (31%), 17.9 % (10.9%) |
Estimated |
τN87, τMCF7
|
Transit time parameter associated with the cell distribution model for N87 and GFP-MCF7 cells |
h |
0.32(18%), 5.0 (12.3%) |
Estimated |
γN87, γMCF7
|
Curve fitting parameter that determines the steepness of the occupancy-response relationship for each cell line |
Unitless |
1.1 (18.2%), 3.1(21.9%) |
Estimated |
|
Percentage improvement in occupancy (“ƛ”) that results in 50% of maximum bystander killing |
Percentage |
59% (12.6%) |
Estimated |
τƛ
|
Transit time parameter associated with the delay between bystander killing signal and observed bystander effect response |
h |
37 (41%) |
Estimated |