Table 2.
Number of positional candidate genes and QTL/associations within the searched genomic regions (±maximum distance of the farest SNP being in strong LD (D′ >0.8) with the lead SNP; D′: average D′ values within the searched genomic region).
| SNP ID | GGA | Position (bp)1 | Searched genomic range around ‘lead’ SNP (±bp) | D′ | Number of positional candidate genes | Number of QTL/associations |
|---|---|---|---|---|---|---|
| rs13923872 | 1 | 112,741,685 | 613,054 | 0.91 | 33 | 20 |
| rs312691174 | 4 | 29,074,989 | 650,472 | 1 | 16 | 14 |
| rs15608447 | 4 | 66,885,210 | 718,407 | 0.88 | 36 | 36 |
| rs318199727 | 10 | 13,536,548 | 737,906 | 0.83 | 33 | 11 |
| rs318098582 | 11 | 18,651,449 | 300,257 | 0.81 | 27 | 9 |
| rs317945754 | 15 | 3,557,083 | 935,183 | 0.99 | 20 | 21 |
| rs316794400 | 22 | 4,594,855 | 26,589 | 0.96 | 7 | 1 |
| rs317288536 | 25 | 976,833 | 1,004,513 | 0.83 | 176 | — |
| rs317627533 | 26 | 4,597,439 | 773,988 | 0.9 | 93 | 6 |
| rs314452928 | 27 | 104,022 | 140,067 | 0.94 | 12 | 3 |
| rs315329074 | 27 | 4,528,275 | 998,553 | 0.98 | 192 | 65 |
1Positions are based on Gallus gallus-5.0 genome assembly.