Table 1.
General statistics for in silico predicted highly expressed (PHX) genes in selected bacterial genomes.
| Genome | Genome size (kb) | Total CDS1 | Total number of PHX2 genes | % PHX genes from total CDS | CDS ≥ 100 codons3 | PHX genes from CDS ≥ 100 codons | % PHX genes (CDS ≥ 100 codons) | Max E(g)4 | Reference | NCBI accession |
|---|---|---|---|---|---|---|---|---|---|---|
| S. Enteritidis P125109 | 4,685 | 4206 | 161 | 3.8 | 3849 | 124 | 3.2 | 3.53 | This study | NC_011294 |
| S. Typhimurium LT2 | 4,857 | 4423 | 171 | 3.9 | 4009 | 130 | 3.2 | 3.75 | This study | NC_003197 |
| B. subtilis str.168 | 4,215 | 4174 | 145 | 3.5 | 3615(3612) | 96(148) | 2.7(4) | 4.54 (2.34) | This study and (23) | NC_000964 |
| E.coli K-12 substr.MG1655 | 4,641 | 4144 | 248 | 6.0 | 3800(3898) | 204(306) | 5.4(8) | 3.71 (2.66) | This study and (23) | NC_000913 |
| C. jejuni (NCTC 11168) | 1,641 | 1622 | 129 | 8.0 | 1452 | 100 | 6.9 | 1.69 | This study | NC_002163 |
| D. radiodurans R1 (BAA-816) | 3,284 | 2997 | 325 | 10.8 | 2828(2629) | 310(362) | 11(14) | 2.94 (1.66) | This study and (37) | NC_001263 NC_001264 |
1CDS, coding sequences.
2PHX, Predicted Highly Expressed.
3Values in parenthesis have been reported previously by the studies cited in the Reference column.
4E(g), predicted general expression level.