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. 2019 Jun 24;20:129. doi: 10.1186/s13059-019-1727-y

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© The Author(s) 2019

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Read and consensus accuracy from Guppy v2.2.3 for a variety of genomes using different models: the default RGRGR model, the included flip-flop model and the two custom models we trained for this study. Both custom models used the same training set which focused primarily on K. pneumoniae, secondarily on the Enterobacteriaceae family and lastly on the Proteobacteria phylum