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. 2019 Jun 25;9:9224. doi: 10.1038/s41598-019-45661-7

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Standard frequency of differential variants between highland and lowland chicken for the selection of chromosomes that have the highest standard frequency. Dividing variants numbers by the chromosome length (Mb), standard frequencies of differential variants were estimated for each chromosome, then chromosomes with high-density of variants were selected (marked with asterisk) in order to be utilized for further analysis. Chromosomes 30–33 are not available in the genome reference.