Table 5:
Repeat content of yellowhorn genome assembly
| Category | Term | Length (bp) | Percentage of genome (%) |
|---|---|---|---|
| DNA transposons | DNA | 374,909 | 0.09 |
| DNA/CMC-EnSpm | 1,699,637 | 0.39 | |
| DNA/MuLE-MuDR | 3,896,024 | 0.89 | |
| DNA/PIF-Harbinger | 1,104,979 | 0.25 | |
| DNA/TcMar-Pogo | 94,067 | 0.02 | |
| DNA/hAT-Ac | 4,103,980 | 0.93 | |
| DNA/hAT-Tag1 | 890,950 | 0.20 | |
| DNA/hAT-Tip100 | 1,213,576 | 0.28 | |
| SINEs | SINE | 343 | 0 |
| SINE/tRNA | 10,674 | 0 | |
| LINEs | LINE/L1 | 16,861,661 | 3.83 |
| LTRs | LTR | 2,861 | 0 |
| LTR/Caulimovirus | 1,360,538 | 0.31 | |
| LTR/Copia | 52,384,264 | 11.91 | |
| LTR/Gypsy | 51,370,228 | 11.68 | |
| LTR/Pao | 88 | 0 | |
| Low_complexity | 1,516,978 | 0.34 | |
| RCs | 4,215 | 0 | |
| RC/Helitron | 5,949 | 0 | |
| Ribosomal RNA | 64,618 | 0.01 | |
| SSRs | 6,971,711 | 1.58 | |
| Unknown | 104,792,508 | 23.76 | |
| Total | 248,724,758 | 56.39 | |
| Genome size | 439,965,977 | 100 |
LINE: long interspersed nuclear element; LTR: long terminal repeat; RC: rolling circle replication; SINE: short interspersed nuclear element; SSR: simple sequence repeat.