Table 4.
Type and number of transcription factors (TFs) encoded by the DEGs of P. cyrtonema
| TF_family | Number of unigenes | Up-regulated unigenes in rhizome versus leaf | Up-regulated unigenes in rhizome versus root |
|---|---|---|---|
| MYB | 314 | 72 | 26 |
| MYB-related | 246 | 51 | 14 |
| AP2-EREBP | 168 | 34 | 17 |
| WRKY | 152 | 61 | 35 |
| bHLH | 150 | 38 | 22 |
| C3H | 124 | 21 | 6 |
| C2H2 | 116 | 26 | 35 |
| NAC | 107 | 30 | 15 |
| FAR1 | 93 | 9 | 7 |
| ABI3VP1 | 72 | 11 | 4 |
| GRAS | 67 | 11 | 15 |
| Zn-clus | 62 | 0 | 0 |
| G2-like | 60 | 5 | 8 |
| mTERF | 59 | 20 | 0 |
| C2C2-GATA | 45 | 11 | 6 |
| FHA | 45 | 2 | 1 |
| Trihelix | 41 | 12 | 19 |
| HSF | 40 | 6 | 11 |
| ARF | 40 | 14 | 7 |
| MADS | 36 | 5 | 6 |
| Tify | 36 | 5 | 5 |
| bZIP | 32 | 4 | 2 |
| TCP | 30 | 14 | 5 |
| C2C2-Dof | 28 | 2 | 2 |
| SBP | 28 | 2 | 1 |
| TUB | 27 | 5 | 1 |
| Other | 313 | 62 | 49 |
| Total number | 2531 | 533 | 319 |