TABLE 7.
Validation of RNA-seq data using real-time PCR for selected genes
Gene symbol | Control vs. vehicle |
hPOSTN-001
vs. control |
hPOSTN-001
vs. vehicle |
|||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
RNA-seq |
Real-time PCR |
RNA-seq |
Real-time PCR |
RNA-seq |
Real-time PCR |
|||||||
Fold change | P | Fold change | P | Fold change | P | Fold change | P | Fold change | P | Fold change | P | |
MARCKS | 686.06 | <0.001 | ∞ | — | −464.80 | <0.001 | ∞ | — | n.s. | — | 0.00 | — |
HIST1H3I | 299.91 | <0.001 | 1489.74 | <0.001 | −331.21 | <0.001 | −1950.95 | <0.001 | n.s. | — | −1.31 | 0.128 |
DMD | 292.68 | <0.001 | 185.85 | <0.001 | −87.37 | <0.001 | −179.32 | <0.001 | n.s. | — | 1.04 | 0.943 |
ZNF714 | 287.84 | <0.001 | 693.09 | <0.001 | −107.52 | <0.001 | −901.34 | <0.001 | n.s. | — | −1.30 | 0.531 |
ZNF91 | 275.43 | <0.001 | 4.77 | <0.001 | −74.55 | <0.001 | −5.11 | <0.001 | n.s. | — | −1.07 | 0.475 |
MAL2 | −16.55 | <0.001 | −13.83 | <0.001 | n.s. | — | 1.76 | 0.001 | −12.60 | <0.001 | −7.88 | <0.001 |
CNTN1 | −17.02 | <0.001 | −15.52 | <0.001 | −3.61 | <0.001 | −3.42 | <0.001 | −61.46 | <0.001 | −53.02 | <0.001 |
DLEC1 | −18.35 | <0.001 | −337.95 | 0.001 | 2.47 | 0.002 | 26.16 | 0.002 | −7.43 | <0.001 | −12.92 | 0.001 |
MPZL2 | −25.64 | <0.001 | ∞ | — | 9.48 | <0.001 | ∞ | — | −2.71 | <0.001 | −6.10 | 0.001 |
DACH2 | −76.22 | <0.001 | −77.45 | <0.001 | 9.84 | <0.001 | 6.35 | <0.001 | −7.75 | <0.001 | −12.21 | <0.001 |
GJB2 | −12.89 | <0.001 | −10.09 | <0.001 | 60.18 | <0.001 | 65.11 | <0.001 | 4.67 | <0.001 | 6.45 | <0.001 |
LRP1B | −7.45 | <0.001 | −7.19 | <0.001 | 42.41 | <0.001 | 46.62 | <0.001 | 5.70 | <0.001 | 6.48 | <0.001 |
HSD17B3 | n.s. | — | 1.11 | 0.553 | 36.43 | <0.001 | −1.04 | 0.718 | 44.18 | <0.001 | 1.07 | 0.690 |
ZIC3 | −5.20 | <0.001 | −6.64 | <0.001 | 24.05 | <0.001 | 29.75 | <0.001 | 4.63 | <0.001 | 4.48 | 0.000 |
PARVA | 80.56 | <0.001 | 3044.90 | <0.001 | −401.67 | <0.001 | −3490.57 | <0.001 | −4.99 | 0.011 | −1.15 | 0.777 |
HIST1H2BE | 108.21 | <0.001 | −1.63 | 0.005 | −423.59 | <0.001 | 1.18 | 0.135 | n.s. | — | −1.39 | 0.005 |
TSPYL5 | 250.62 | <0.001 | 136,573.66 | 0.006 | −461.22 | <0.001 | −61,464.31 | 0.006 | n.s. | — | 2.22 | 0.222 |
PCDHB5 | 94.91 | <0.001 | 107.79 | <0.001 | −667.80 | <0.001 | −120.79 | <0.001 | −7.04 | <0.001 | −1.12 | 0.195 |
CMKLR1 | 3.49 | 0.002 | 4.49 | <0.001 | 9.17 | <0.001 | 11.63 | <0.001 | 32.04 | <0.001 | 52.22 | <0.001 |
TRPM3 | 2.84 | 0.015 | −1.51 | 0.558 | 8.81 | <0.001 | 17.71 | <0.001 | 25.00 | <0.001 | 11.75 | <0.001 |
DRD2 | 12.71 | <0.001 | 16.03 | <0.001 | 1.66 | 0.006 | 1.50 | 0.008 | 21.12 | <0.001 | 24.12 | <0.001 |
OLFM3 | n.s. | — | 1.27 | 0.077 | −50.24 | <0.001 | −336.41 | <0.001 | −41.78 | <0.001 | −265.75 | <0.001 |
ITGA8 | −1.82 | <0.001 | −1.44 | 0.005 | −35.53 | <0.001 | −101.14 | <0.001 | −64.64 | <0.001 | −145.75 | <0.001 |
LUZP2 | −3.57 | <0.001 | −6.12 | <0.001 | −19.31 | <0.001 | −5.42 | <0.001 | −68.84 | <0.001 | −33.15 | <0.001 |
RIPPLY3 | n.s. | — | −1.13 | 0.286 | −52.75 | <0.001 | −61.36 | <0.001 | −70.45 | <0.001 | −69.33 | <0.001 |
n.s., not significant.