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. 2019 Jun 26;5(6):eaav0547. doi: 10.1126/sciadv.aav0547

Table 2. Annotations statistics.

CNE, conserved noncoding element (i.e., potential enhancers/promoters); GO, gene ontology.

Goldfish Common carp Zebrafish
(danRer10)
Assembly size
(bp)
1,820,635,051 1,713,641,436 1,371,719,383
GC content 37.48% 36.99% 36.64%
Repeats (bp) 721,087,053 (39.6%) 672,246,354 (39.2%) 745,150,642
(54.3%)
Protein-coding
genes
70,324 66,999 25,600
(Ensembl
release 85)
Genes with GO 49,272 18,779*
Exons 556,731 547,164 276,021
Genes with
InterPro
49,272 44,845* 24,204*
miRNA 1,037 769
ncRNA
(noncoding
RNA)
11,820
4-way CNE
counts
486,767 484,139* 237,891*
4-way CNE bp 95,815,233 97,818,440* 44,090,004*
Missing
BUSCOs (of
3023)
167 330* 0 (used for original BUSCO set)

*Data generated from this study.