Table 2.
Variables | rsID | Maj | Min | Genotype | Dominant | Recessive | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Maj hom | Het | Min hom | P | FDR P | Maj hom + het | Min hom | P | FDR P | Maj hom | Het + min hom | P | FDR P | ||||
6‐TGN | ||||||||||||||||
ATIC | rs16853834 | C | T | 2.56 ± 0.20 | 2.65 ± 0.22 | 2.59 ± 0.12 | 0.0903 | 0.9914 | 2.60 ± 0.21 | 2.59 ± 0.12 | 0.9149 | 0.9553 | 2.56 ± 0.20 | 2.64 ± 0.20 | 0.0415 | 0.9077 |
GART | rs2070388 | G | C | 2.57 ± 0.20 | 2.69 ± 0.19 | 2.51 ± 0.35 | 0.0090 | 0.3135 | 2.60 ± 0.20 | 2.51 ± 0.35 | 0.2263 | 0.9553 | 2.57 ± 0.20 | 2.65 ± 0.23 | 0.0351 | 0.9077 |
HIVEP2‐AIG1 a | rs200148 | G | A | 2.60 ± 0.20 | 2.41 ± 0.35 | 0.0194 | 0.5052 | |||||||||
XDH | rs2295475 | G | A | 2.57 ± 0.25 | 2.59 ± 0.18 | 2.71 ± 0.19 | 0.0634 | 0.9914 | 2.58 ± 0.21 | 2.71 ± 0.19 | 0.0235 | 0.9553 | 2.57 ± 0.25 | 2.62 ± 0.18 | 0.2216 | 0.9077 |
NUDT15 | rs116855232 | C | T | 2.64 ± 0.19 | 2.51 ± 0.15 | 1.95 ± 0.27 | <.0001 | <.0001 | 2.61 ± 0.19 | 1.95 ± 0.27 | <.0001 | <.0001 | 2.64 ± 0.19 | 2.46 ± 0.24 | <.0001 | 0.0024 |
NUDT15 | rs186364861 | G | A | 2.62 ± 0.19 | 2.39 ± 0.28 | <.0001 | 0.0040 | |||||||||
6‐MeMPN | ||||||||||||||||
ATIC | rs3821353 | T | G | 3.48 ± 0.67 | 3.76 ± 0.46 | 3.52 ± 0.56 | 0.0438 | 0.9027 | 3.62 ± 0.59 | 3.52 ± 0.56 | 0.3589 | 0.9666 | 3.48 ± 0.67 | 3.65 ± 0.52 | 0.1125 | 0.7348 |
ATIC | rs16853834 | C | T | 3.53 ± 0.57 | 3.74 ± 0.52 | 3.77 ± 0.46 | 0.0779 | 0.9027 | 3.62 ± 0.56 | 3.77 ± 0.46 | 0.3735 | 0.9666 | 3.53 ± 0.57 | 3.74 ± 0.51 | 0.0240 | 0.7348 |
FAM8A6P | rs1040637 | G | A | 3.64 ± 0.55 | 3.32 ± 0.73 | 3.42 ± 0.54 | 0.1131 | 0.9027 | 3.6 ± 0.57 | 3.42 ± 0.54 | 0.5977 | 0.9978 | 3.64 ± 0.55 | 3.34 ± 0.69 | 0.0383 | 0.7348 |
MTHFD1 | rs2236225 | G | A | 3.51 ± 0.62 | 3.71 ± 0.47 | 3.98 ± 0.39 | 0.0775 | 0.9027 | 3.59 ± 0.57 | 3.98 ± 0.39 | 0.2443 | 0.9666 | 3.51 ± 0.62 | 3.73 ± 0.46 | 0.0338 | 0.7348 |
MTHFR | rs1801133 | C | T | 3.58 ± 0.60 | 3.55 ± 0.59 | 3.88 ± 0.33 | 0.1226 | 0.9027 | 3.56 ± 0.59 | 3.88 ± 0.33 | 0.0418 | 0.9666 | 3.58 ± 0.60 | 3.60 ± 0.57 | 0.8647 | 0.9763 |
NUDT15 | rs147390019 | G | A | 3.62 ± 0.55 | 2.97 ± 0.94 | 0.0239 | 0.9027 | |||||||||
NUDT15 | rs186364861 | G | A | 3.62 ± 0.58 | 3.42 ± 0.43 | 0.2224 | 0.9027 | |||||||||
TPMT | *1 | Other | 3.62 ± 0.55 | 3.05 ± 0.69 | 0.0156 | 0.9027 | ||||||||||
6‐MeMPN/6‐TGN ratio | ||||||||||||||||
ABCC4 | rs2274407 | C | A | 0.98 ± 0.58 | 1.08 ± 0.49 | −0.09 ± 0.00 | 0.0932 | 0.9573 | 1.01 ± 0.55 | −0.09 ± 0.00 | 0.0481 | 0.9388 | 0.98 ± 0.58 | 1.05 ± 0.51 | 0.5103 | 0.9371 |
ATIC | rs3821353 | T | G | 0.88 ± 0.72 | 1.18 ± 0.43 | 0.92 ± 0.57 | 0.0329 | 0.9573 | 1.03 ± 0.61 | 0.92 ± 0.57 | 0.3294 | 0.9388 | 0.88 ± 0.72 | 1.06 ± 0.51 | 0.1006 | 0.9371 |
FAM8A6P | rs1040637 | G | A | 1.04 ± 0.55 | 0.74 ± 0.78 | 0.75 ± 0.77 | 0.1339 | 0.9573 | 1.01 ± 0.58 | 0.75 ± 0.77 | 0.4579 | 0.9550 | 1.04 ± 0.55 | 0.74 ± 0.75 | 0.0446 | 0.9371 |
GNG2 | rs12886319 | T | C | 1.14 ± 0.50 | 0.89 ± 0.65 | 1.10 ± 0.43 | 0.0507 | 0.9573 | 0.99 ± 0.61 | 1.10 ± 0.43 | 0.4289 | 0.9550 | 1.14 ± 0.50 | 0.93 ± 0.61 | 0.0481 | 0.9371 |
MTHFD1 | rs2236225 | G | A | 0.91 ± 0.66 | 1.10 ± 0.41 | 1.41 ± 0.28 | 0.0905 | 0.9573 | 0.98 ± 0.58 | 1.41 ± 0.28 | 0.2080 | 0.9388 | 0.91 ± 0.66 | 1.12 ± 0.41 | 0.0457 | 0.9371 |
NUDT15 | rs147390019 | G | A | 1.02 ± 0.56 | 0.37 ± 1.17 | 0.0269 | 0.9573 | |||||||||
NUDT15 | rs186364861 | G | A | 1.00 ± 0.60 | 1.03 ± 0.39 | 0.0269 | 0.9864 | |||||||||
TPMT | *1 | Other | 1.03 ± 0.57 | 0.39 ± 0.50 | 0.0085 | 0.8871 |
Abbreviations: FDR, false‐discovery rate; Het, heterozygote; Maj: major allele; Maj hom, major allele homozygote; Min hom, minor allele homozygote; Min, minor allele.
P‐values < 0.05 calculated by linear regression analysis are shown in bold.
Intronic SNP between theAIG1 and HIVEP2 gene.