Table 1.
Samples/data | Birth cohort visits | RSVa positive illness | |||||
|
Birth | 1 month | Illness surveillance | Acute (day 2-7) | Day 12-16 | Day 25-35 | |
Demographic | Xb | X | —c | X | X | X | |
Clinical | X | X | — | X | X | X | |
Cord blood for antibody | X | — | — | — | — | — | |
Buccal swab for cytomegalovirus polymerase chain reaction | X | X | — | X | — | — | |
Nasal swab RSV RT-PCRd | — | — | X | — | — | — | |
Nasal swab for: | |||||||
|
Quantitative RSV RT-PCR | — | — | — | X | — | X |
|
Viral coinfection | — | — | — | X | — | X |
|
RSV gene sequencing | — | — | — | X | — | X |
|
Microbiome | — | X | — | X | — | X |
Nasal wash | — | X | — | X | — | X | |
Nasal brush for epithelial cell RNAseqe | — | X | — | X | — | X | |
Blood for: | |||||||
|
Peripheral blood mononuclear cells flow cytometry | — | — | — | X | X | X |
|
CDf4, CD8, B, natural killer RNAseq | — | — | — | X | X | — |
|
Antibody assays | — | — | — | X | X | X |
aRSV: respiratory syncytial virus.
bX indicates samples at this time point.
cIndicates no samples collected at time point.
dRT-PCR: reverse-transcriptase polymerase chain reaction.
eRNAseq: ribonucleic acid sequencing.
fCD: cluster of differentiation.