Table 3.
Species specific 16S rRNA gene-targeted primers and UPL probes used for bacterial community analysis.
| Target bacterial species | Oligonucleotide sequence (5'-3') | UPL probe | References |
|---|---|---|---|
| Escherichia coli LF82 | F: GGGACCTTAGGGCCTCTTG R: GCCTAGGTGAGCCTTTACCC |
104 | This study |
| Enterococcus faecalis OG1RF | F: GGTCATTGGAAACTGGGAGA R: TTCACCGCTACACATGGAAT |
91 | This study |
| Ruminococcus gnavus ATCC 29149 | F: GGGACTGATTTGGAACTGT R: CGCATTTCACCGCTACACTA |
55 | This study |
| Bacteroides vulgatus ATCC 8482 | F: CGCAACCCTTGTTGTCAGT R: CATCTTACGATGGCAGTCTTGT |
73 | This study |
| Faecalibacterium prausnitzii A2-165 | F: TATTGCACAATGGGGGAAAC R: CAACAGGAGTTTACAATCCGAAG |
69 | This study |
| Lactobacillus plantarum WCFS1 | F: CGAAGAAGTGCATCGGAAAC R: TCACCGCTACACATGGAGTT |
35 | This study |
| Bifidobacterium longum subsp. longum ATCC 15707 | F: TGGTAGTCCACGCCGTAAA R: TAGCTCCGACACGGAACC |
42 | This study |
| Total bacteria | F: YAACGAGCGCAACCC R: AAGGGSCATGATGAYTTGACG |
69 | (47) |