TABLE 2.
Detailed information on the primers used for sequencing GZ201808.
Primer targeting | Primer sequence (5′→3′) | Product |
region (nt)a | length (bp) | |
13–878 | TGACATCACCGTTCGCTCTT; | 865 |
CCCTTCAGGTGAAACACGGA | ||
139–1017 | TTTCCCGCCTTTGAGGTTGA; | 879 |
CATCAGGAAACCCTCTGCGT | ||
952–1263 | AGCCCGGGCATATATGGAAAA; | 312 |
CGTGCCCATTTACTGAATGCT | ||
1166–2536 | AACGCATAGTGGTGAAYGGT; | 1371 |
AACCACACTGCTTAGGGTCK | ||
2448–2723 | GTGTCACTCGGGTACTTTGC; | 276 |
GAAGAACCGGTGGTGTCAAT | ||
2639-3779 | TCGTGTCCACCTTGCACTAC; | 1141 |
TGGTCGACGCATTGTTGGTA | ||
3694–3889 | CCTATGGATGCAGGCCGTTA; | 196 |
CCACCATCTCGCTGACTCTG | ||
3793–4948 | CAGATGCTGGGAGGGGATTC; | 1156 |
ATGGAAAGGAGGAGCACACG | ||
4850–6118 | CGGTACCGTGTCTATGTCGG; | 1269 |
TGTCGAGGCAGCTTTCAGAG | ||
6003–7269 | GGCCGCCTGTAACTCTTTYT; | 1267 |
TTCATCCTGGTTGTCGTCCG | ||
7225–8994 | TTCAAACTCGGGAAACCGCT; | 1770 |
CGGTAGTCAGCTGGTACGTC | ||
8472–9980 | GAGGCCACGATGACGTGTAA; | 1509 |
CGTTGCGGTGTGTTCGTAAG | ||
9902–11091 | CTGCTGCAAACCGCTWTCTT; | 1190 |
TGCATGTCGTTTTGRCACTG | ||
11059–11424 | AGGTATCTGTGTGCAGTGCC; | 366 |
GGTTACTGGCCCYTTGAACT |
aNumbered according to GETV strain AH9192 (MG865965). Y = C/T; K = G/T; W = A/T; R = A/G.