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. 2015 Apr 30;39(3):301–315. doi: 10.1093/femsre/fuv017

Figure 5.

Figure 5.

Accumulation of 33 abundant sRNAs in Synechocystis sp. PCC 6714 under nine different growth conditions. (A and B) The 10 most abundant sRNAs and an additional 23 abundant sRNAs with interesting expression patterns were chosen. Relative abundance of sRNAs was estimated by the number of associated reads in dRNA-seq analysis (Kopf et al.2015a). If conserved in Synechocystis PCC 6803, the corresponding sRNA name or transcriptional unit is given in parentheses. With PsrR1 (high light), IsaR1 (-Fe) and NsiR4 (nitrogen depletion), selected sRNAs with condition-dependent high accumulation were independently verified for Synechocystis sp. PCC 6714 (Kopf et al.2015a). Similar to Synechocystis sp. PCC 6803, several other stress-inducible sRNAs are top regulatory candidates under each respective condition, and some sRNAs may encode short peptides. (B) Enlargement of the 23 less abundant sRNAs from panel (A) for better resolution. The sequences of these sRNAs were inferred from transcriptome analysis (Kopf et al.2015a) and are available for download (Supplemental file 2).