Table 1.
Numbers and types of putative TSSs mapped for different cyanobacteria by dRNA-Seq. TSS classification into four types from which the transcription of protein-coding genes (gTSS), antisense and intragenic transcripts (aTSS and iTSS) and non-coding RNAs (nTSS) is given according to the mentioned references (see Fig. 1 for classification of different TSS types). The respective percentage of nTSS from all TSS is indicated. Ana, Anabaena sp. PCC 7120; Nspu, N. spumigena CCY9414; MED4 and MIT9313, Prochlorococcus sp. MED4 and MIT9313; S6714 and S6803, Synechocystis sp. PCC 6714 and 6803; IMS101, T. erythraeum sp. IMS101.
| No. | Ana | Nspu | MED4 | MIT9313 | Sy6803 | Sy6714 | IMS101 |
|---|---|---|---|---|---|---|---|
| gTSS | 4186 | 1472 | 1059 | 1284 | 2245 | 1924 | 1858 |
| aTSS | 4172 | 1460 | 658 | 2256 | 2327 | 1976 | 855 |
| iTSS | 3933 | 1476 | 1566 | 3231 | 1734 | 862 | 1746 |
| nTSS | 1414 | 621 | 176 | 639 | 371 | 306 | 1621 |
| % nTSS | 10.3 | 12.3 | 5.1 | 8.6 | 5.5 | 6 | 26.7 |
| All TSS | 13 705 | 5029 | 3459 | 7410 | 6677 | 5068 | 6080 |
| Reference | Mitschke et al. (2011b) | Voss et al. (2013); Kopf et al. (2015a) | Voigt et al. (2014) | Voigt et al. (2014) | Mitschke et al. (2011b); Kopf et al. (2014a) | Kopf et al. (2015a) | Pfreundt et al. (2014) |