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. Author manuscript; available in PMC: 2020 Jun 24.
Published in final edited form as: J Chem Inf Model. 2019 May 29;59(6):2964–2972. doi: 10.1021/acs.jcim.9b00256

Table 1.

The free energy of opening, as determined by WHAM analysis of umbrella sampling simulations, for cNTnC, cNTnC–cTnI, cNTnC–bepridil, cNTnC–cTnI–bepridil, cNTnC–dfbp-o, cNTnC–cTnI–dfbp-o, cNTnC–DPA, cNTnC–cTnI–DPA, cNTnC–W7, cNTnC–cTnI–W7. The free energy values were calculated from triplicate umbrella sampling simulations.

cTnC complex Free energy of opening(kcal/mol)
Holo cTnC 13.8 ± 2.2
Tnl-bound Holo −6.3 ± 0.2
Bepridil 1.6 ± 2.8
Tnl-bound Bepridil −2.6 ± 0.4
dFBP-o 3.4 ± 0.5
Tnl-bound dFBP-o −9.9 ± 4.9
DPA 3.1 ± 0.5
Tnl-bound DPA −11.8 ± 1.5
W7 3.1 ± 0.8
Tnl-bound W7 −1.7 ± 0.7