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. 2019 Jun 27;9:9345. doi: 10.1038/s41598-019-45835-3

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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The summary of variants calling performances of multiple combinations in WGS datasets. (A) Accuracy of SNPs (up) and INDELs (down) calls for BGISEQ500, MGISEQ2000, HiSeq4000, NovaSeq and Xten WGS datasets. Large solid circles indicate the pass threshold of each combination. (B) Box plot indicates the distribution of F-score of multiple combinations in calling SNPs (up) and INDELs (down).