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. 2019 Jun 27;9:9345. doi: 10.1038/s41598-019-45835-3

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Intersection of variant Calling Results of all Combinations in SNPs and INDELs of WGS datasets. The top bar-plot indicates the intersection size. This plot provides the number of variants that are uniquely called by one tool (a single point) or the numbers of variants called by many tools (two or more points). The bottom left plot indicates the set size. The linked points below display the intersecting sets of interest or which tools called variants. (A) UpSetR plot indicates intersection of variant calling results of all combinations in SNPs. (B) UpSetR plot indicates intersection of variant calling results of all combinations in INDELs.