Table 1.
Selected CDSs for MBW proteins in five plant species*
| Gene name used in this study | Gene ID | Reference sequence | |
|---|---|---|---|
| Arabidopsis thaliana, Col-0 | |||
| R2R3 MYB | AtGL1 | AT3G27920 | NM_113708.2 |
| AtWER | AT5G14750 | NM_121479.3 | |
| AtPAP1 | AT1G56650 | NM_104541.4 | |
| AtPAP2 | AT1G66390 | NM_105310.4 | |
| AtTT2 | AT5G35550 | NM_122946.3 | |
| AtMYB61 | AT1G09540 | NM_100825.5 | |
| bHLH | AtGL3 | AT5G41315 | NM_148067.4 |
| AtEGL3 | AT1G63650 | NM_202351.2 | |
| AtMYC1 | AT4G00480 | NM_001160722.2 | |
| AtTT8 | AT4G09820 | NM_117050.3 | |
| WD40 | AtTTG1 | AT5G24520 | NM_122360.2 |
| Arabis alpina, Pajares | |||
| R2R3 MYB | AaGL1 | AALP_AA5G050100 | A_alpina_V4.cds** |
| AaWER | AALP_AA8G149800 | A_alpina_V4.cds** | |
| AaPAPL | AALP_AAs71396U000200*** | A_alpina_V4.cds** | |
| bHLH | AaGL3 | AALP_AA6G320200 | A_alpina_V4.cds** |
| AaEGL3 | AALP_AA6G002800 | A_alpina_V4.cds** | |
| AaMYC1 | AALP_AA6G006500.1 | A_alpina_V4.cds** | |
| AaTT8 | AALP_AA6G192900 | A_alpina_V4.cds** | |
| WD40 | AaTTG1 | AALP_AA8G421800 | A_alpina_V4.cds** |
| Gossypium hirsutum, TM-1 | |||
| R2R3 MYB | GhMYB2 | AF034130.1 | |
| GhMYB25 | AY464054.1 | ||
| GhRLC1 | NM_001327615.1 | ||
| bHLH | GhDEL65 | AF336280.1 | |
| GhDEL61 | AF336279.1 | ||
| WD40 | GhTTG1 | AF530907.1 | |
| GhTTG2 | AF530909.1 | ||
| GhTTG3 | AF530911.1 | ||
| GhTTG4 | AF530912.1 | ||
| Petunia × hybrida, cultivar R27 | |||
| R2R3 MYB | PhAN2 | AF146704 | |
| PhAN4 | HQ428105.1 (V30) or EB175066 (R27) | ||
| PhPH4 | AY973324.1 | ||
| bHLH | PhAN1 | AF260919.1 | |
| PhJAF13 | AF260918 | ||
| WD40 | PhAN11 | U94748.1 | |
| Zea mays, cultivar B73 | |||
| R2R3 MYB | ZmC1 | GRMZM2G005066 | AY237128 |
| ZmPL | GRMZM2G701063 | KJ727236.1 | |
| ZmP1 | GRMZM2G084799 | KJ728395.1 | |
| bHLH | ZmR(Lc) | GRMZM5G822829 | KJ726800.1 |
| ZmR(S) | Zm00001d026147 | XM_008663066.3 (6s) | |
| ZmB | GRMZM2G172795 | KJ727396.1 | |
| WD40 | ZmPAC1 | GRMZM2G058292 | KJ728394.1 |
| ZmMP1 | GRMZM2G099334 | AY339884.1 (Carey et al., 2004) |
* Data presented in this table have been extracted from the following sources. For A. thaliana: https://www.ncbi.nlm.nih.gov/nuccore;www.arabidopsis.org. For A. alpina: http://www.arabis-alpina.org/refseq.html (Willing et al., 2015). For cotton: Gossypium hirsutum cultivar TM-1 seed was kindly provided by Dr Jing Qu (Institute of Microbiology, Chinese Academy of Sciences, China). Examples for reference sequences of plasmids were selected from NCBI BLASTn (Cedroni et al., 2003; Wang et al., 2004; Gao et al., 2013; Guan et al., 2014; Wan et al., 2014). For petunia: plasmids were kindly provided by R. Koes. Examples for reference sequences of plasmids were selected from NCBI BLASTn (Altschul and Gish, 1996; Zhang et al., 2000; Morgulis et al., 2008). For maize (both plasmids and own cloning reference): https://www.maizegdb.org/;http://plants.ensembl.org/Zea_mays/Info/Index?db=core;https://www.ncbi.nlm.nih.gov/nuccore; genome assembly AGPv4, B73 RefGen_v4 (information on the assembly at http://plants.ensembl.org/Zea_mays/Info/Annotation/#genebuild); plasmids from the maize TFome (transcription factor ORF collection) (Burdo et al., 2014) were selected from https://grassius.org/index.php (Yilmaz et al., 2009).
** A_alpina_V4.cds.fasta from http://www.arabis-alpina.org/refseq.html (Willing et al., 2015).
*** AaPAPL was first identified at the protein level using A. alpina protein sequences, http://www.arabis-alpina.org/refseq.html (Willing et al., 2015).