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a Flowchart of model construction process from PlantCyc dataset; b Construction of multi-tissue model from GSM. Input/output (_tx) transporters were used to transport minerals, water, CO2, O2, etc., to/from external (Ext) environment. Biomass synthesis reactions (_biomass) were included to allow the model to produce biomass components which can be used to explore quantitative biomass production. Abbreviations: Chl chloroplast, Mit mitochondria, Per peroxisome, Vac vacuole, Cyto cytosol
