Table 7.

Biological processes enriched by up-regulated contigs only found in FDP versus T₀ (see blue fraction in Venn diagram Additional file 1: Figure S1). Terms sorted by the number of contributing contigs

GO.ID	Term	Annotated	Significant	Expected	p-value
GO:0065007	biological regulation	2021	62	47.66	0.00925
GO:0050789	regulation of biological process	1973	61	46.53	0.00837
GO:0050794	regulation of cellular process	1934	59	45.61	0.01308
GO:0006725	cellular aromatic compound metabolic process	1375	42	32.43	0.03914
GO:0090304	nucleic acid metabolic process	1097	35	25.87	0.03448
GO:0016070	RNA metabolic process	884	30	20.85	0.02407
GO:0060255	regulation of macromolecule metabolic process	619	22	14.6	0.03315
GO:0080090	regulation of primary metabolic process	622	22	14.67	0.03473
GO:0031323	regulation of cellular metabolic process	632	22	14.9	0.04041
GO:0019222	regulation of metabolic process	641	22	15.12	0.04609
GO:0051252	regulation of RNA metabolic process	572	20	13.49	0.04778
GO:0006396	RNA processing	189	10	4.46	0.01367
GO:0006955	immune response	50	7	1.18	0.00015
GO:0002376	immune system process	52	7	1.23	0.0002
GO:0008219	cell death	58	6	1.37	0.00231
GO:0016265	death	58	6	1.37	0.00231
GO:0010941	regulation of cell death	45	5	1.06	0.00391
GO:0042981	regulation of apoptotic process	45	5	1.06	0.00391
GO:0043067	regulation of programmed cell death	45	5	1.06	0.00391
GO:0006915	apoptotic process	57	5	1.34	0.0107
GO:0012501	programmed cell death	57	5	1.34	0.0107
GO:0048518	positive regulation of biological process	67	5	1.58	0.02048
GO:0006397	mRNA processing	68	5	1.6	0.0217
GO:0016071	mRNA metabolic process	79	5	1.86	0.03824
GO:0019882	antigen processing and presentation	26	4	0.61	0.00297
GO:0051726	regulation of cell cycle	40	4	0.94	0.01409
GO:0015074	DNA integration	55	4	1.3	0.04013
GO:0010942	positive regulation of cell death	13	3	0.31	0.0031
GO:0043065	positive regulation of apoptotic process	13	3	0.31	0.0031
GO:0043068	positive regulation of programmed cell death	13	3	0.31	0.0031
GO:0007050	cell cycle arrest	18	3	0.42	0.0081
GO:0045786	negative regulation of cell cycle	21	3	0.5	0.01254
GO:0008380	RNA splicing	26	3	0.61	0.0225