Table 2.
Effector candidates predicted by OPT4e.
| Suggest | HGE1 | HGE1 (other) | HZ | HZ (other) | Notes |
|---|---|---|---|---|---|
| HGE1_00145 | APH_0033 | ||||
| * | HGE1_00220 | S, T4 | APH_0049 | S, T4 | |
| * | HGE1_00312 | T4 | APH_0068 | T4 | |
| * | HGE1_00527 | S | APH_0117 | S, T4 | |
| HGE1_00815 | APH_0189 | HZ: 7-aa insert at start | |||
| * | HGE1_01135 | S, T4 | APH_0259 | S, T4 | |
| * | HGE1_01175 | T4 | APH_0267 | T4 | HGE1: 17-aa insert at start |
| HGE1_01752 | APH_0382 | ||||
| * | HGE1_01772 | APH_0385 | T4 | ||
| HGE1_02100 | APH_0385 | ||||
| HGE1_01777 | APH_0386 | ||||
| HGE1_01782 | APH_0387 | ||||
| HGE1_02092 | APH_0452 | ||||
| HGE1_02095 | APH_0453 | ||||
| HGE1_02117 | APH_0453 | ||||
| HGE1_02107 | APH_0455 | S | Known effector | ||
| * | HGE1_02112 | APH_0457 | T4 | ||
| * | HGE1_02242 | T4 | APH_0485 | T4 | |
| * | HGE1_02492 | S, T4 | APH_0546 | S, T4 | |
| * | HGE1_02802 | T4 | APH_0633 | T4 | |
| * | HGE1_02817 | T4 | APH_0636 | T4 | HGE1: 3-aa insert at start |
| HGE1_02827 | APH_0641 | ||||
| HGE1_02947 | APH_0670 | First aa different | |||
| * | HGE1_03022 | APH_0688 | T4 | ||
| * | HGE1_03117 | APH_0708 | T4 | ||
| * | HGE1_03122 | S | APH_0709 | S, T4 | |
| * | HGE1_03182 | S, T4 | APH_0726 | S, T4 | |
| * | HGE1_03232 | S, T4 | APH_0740 | S, T4 | Known effector |
| HGE1_03297 | APH_0755 | ||||
| * | HGE1_03432 | APH_0792 | T4 | ||
| * | HGE1_03492 | S | APH_0805 | S, T4 | |
| * | HGE1_03497 | APH_0807 | T4 | ||
| * | HGE1_03502 | T4 | APH_0808 | ||
| HGE1_03532 | APH_0815 | ||||
| HGE1_03557 | APH_0820 | ||||
| HGE1_03697 | S, T4 | APH_0859 | S, T4 | Known effector | |
| * | HGE1_03707 | T4 | APH_0861 | T4 | |
| * | HGE1_02737 | T4 | APH_0863 | S | |
| * | HGE1_03892 | S, T4 | APH_0914 | S, T4 | |
| * | HGE1_05072 | T4 | APH_1167 | T4 | |
| * | HGE1_03907 | APH_0916 | T4 | ||
| HGE1_03962 | APH_0928 | ||||
| * | HGE1_04167 | T4 | APH_0976 | T4 | |
| HGE1_03507 | HZ homolog not predicted | ||||
| HGE1_05977 | APH_1365 | First aa different | |||
| * | HGE1_05997 | T4 | APH_1369 | T4 | HZ: 6-aa insert at start |
| * | HGE1_06052 | S | APH_1379 | S | HZ: 14-aa insert in middle |
| * | HGE1_06067 | T4 | APH_1383 | T4 | |
| APH_0239 | No equivalent sequence in HGE1 | ||||
| APH_0904 | No equivalent sequence in HGE1 | ||||
| APH_0028 | No equivalent sequence in HGE1 | ||||
| APH_0640 | No equivalent sequence in HGE1 | ||||
| APH_0816 | No equivalent sequence in HGE1 |
HGE1 and HZ homologs are row aligned. Blue, orange, and red text colors indicate More Likely, Possible, and Less Likely effector candidates, respectively. Black text indicates that a sequence was not predicted as an effector. The columns HGE1 (other) and HZ (other) indicate when a sequence was predicted as an effector candidate by S4TE (S) or T4EffPred (T4). The Notes column lists differences between HGE-1 and HZ homologs, and finally the Suggest column indicates effector candidates proposed for initial experimental validation based on the strength of their predictions.