Table 1.

Comparative summary statistics of alpaca genome assemblies.

	VicPac3.1	VicPac3.0	Qmas1/VicPac2	Qmas1	VicPac2.0	VicPac1.0	Vipacos_V1.0
Breed	Huacaya	Huacaya	Huacaya	Huacaya	Huacaya	Huacaya	Huacaya
Sex	Female	Female	Female	Female	Female	Female	Female
Individual	Carlotta	Carlotta	Carlotta	Carlotta	Carlotta	Carlotta	n/a
Assembly size (Gb)	2.12	2.12	2.12	2.66	2.17	2.96	2.01
Contig N50 (kb)	35.72	35.75	35.75	306.09	29.07	3.91	66.3
Number of contigs	204,817	204,577	205,666	719,860	412,904	721,292	75,733
Scaffold N50 (Mb)	24.02	9.86	9.06	5.83	7.26	0.23	5.1
Scaffold L50	25	64	69	126	86	2,595	–
Number of scaffolds	77,390	78,963	82,481	678,087	276,726	298,413	4,322
Longest scaffold (Mb)	121.37	38.36	38.36	25.07	38.45	5.51	–
GC %	41.4	41.4	41.4	41.6	41.4	39.7	41.5
N’s %	4.17	4.09	3.98	2.44	4.31	35.09	–
Repeat %	33.48	–	–	–	34.74		32.1
Reference	This study	This study	This study	This study	NCBIa,	NCBI,	Wu et al., 2014
					UCSCb,	UCSC,
					Ensemblc	Ensembl

Source: ^ahttps://www.ncbi.nlm.nih.gov/, ^bhttps://genome.ucsc.edu/, ^chttp://www.ensembl.org/index.html.