Table 3.
Chromosomal assignment of VicPac3.1 showing per each chromosome assembly size, number of unique assigned scaffolds, number of annotated genes, gene density, and human homology.
| VicPac3.1 | VicPac2.0.2 | ||||||
|---|---|---|---|---|---|---|---|
| Alpaca chr. | Assembly size, bp | No. of unique mapped scaffolds | No. of genes | Genes per Mb | Human homology | Assembly size, bp | No. of unique mapped scaffolds |
| 1 | 101,041,233 | 5 | 1625 | 16.1 | 3q, 21q | 41,153,578 | 5 |
| 2 | 121,370,620 | 1 | 1650 | 13.6 | 4 | 36,264,523 | 4 |
| 3 | 83,363,794 | 3 | 1269 | 15.2 | 5 | 66,866,246 | 7 |
| 4 | 65,636,945 | 3 | 1166 | 17.8 | 9 | 36,674,619 | 6 |
| 5 | 96,274,254 | 1 | 1428 | 14.9 | 2q | 67,623,744 | 5 |
| 6 | 74,791,714 | 2 | 1448 | 19.6 | 14q, 15q | 34,188,095 | 5 |
| 7 | 31,168,711 | 1 | 641 | 2.1 | 7 | 9,531,993 | 3 |
| 8 | 70,270,077 | 1 | 1028 | 14.7 | 6q | 62,544,616 | 5 |
| 9 | 74,791,714 | 3 | 1081 | 14.4 | 1p, 16q, 19q | 26,984,682 | 4 |
| 10 | 39,582,034 | 1 | 794 | 19.9 | 11 | 0 | 0 |
| 11 | 77,176,758 | 6 | 1958 | 25.4 | 1q, 10q | 36,454,531 | 6 |
| 12 | 48,986,614 | 2 | 910 | 18.6 | 12q | 30,043,790 | 2 |
| 13 | 61,008,235 | 3 | 1491 | 2.4 | 1p | 55,336,466 | 6 |
| 14 | 67,111,318 | 2 | 901 | 13.4 | 13q | 19,497,535 | 4 |
| 15 | 32,418,436 | 2 | 643 | 2.0 | 2p | 23.521.627 | 3 |
| 16 | 39,074,364 | 6 | 1220 | 3.1 | 10p, 17q | 36,989,750 | 8 |
| 17 | 46,944,759 | 1 | 887 | 18.9 | 3p | 40,598,934 | 2 |
| 18 | 29,910,177 | 2 | 930 | 31.0 | 7, 16p | 24,952,824 | 2 |
| 19 | 24,022,313 | 1 | 693 | 28.9 | 20q | 12,494,946 | 1 |
| 20 | 38,741,345 | 2 | 1110 | 28.5 | 6p | 15,672,241 | 2 |
| 21 | 29,520,914 | 3 | 895 | 30.9 | 1q, 16q∗ | 15,741,292 | 4 |
| 22 | 25,522,599 | 1 | 891 | 34.3 | 5q, 19p | 26,415,928 | 2 |
| 23 | 29,440,657 | 2 | 520 | 17.9 | 1q, 13q | 32,337,675 | 3 |
| 24 | 18,346,407 | 1 | 318 | 17.7 | 18 | 15,189,407 | 2 |
| 25 | 60,195,357 | 3 | 1467 | 24.5 | 8q | 26,317,781 | 5 |
| 26 | 27,987,978 | 2 | 537 | 19.2 | 4q, 8p | 32,483,939 | 2 |
| 27 | 22,699,463 | 1 | 11 | 0.5 | 15q | 8,774,263 | 2 |
| 28 | 16,162,605 | 1 | 412 | 25.8 | 2p | 13,182,695 | 2 |
| 29 | 16,162,605 | 2 | 461 | 28.8 | 8q | 24,598,565 | 2 |
| 30 | 13,130,742 | 3 | 238 | 18.3 | 18q | 11,278,592 | 3 |
| 31 | 13,602,737 | 1 | 323 | 23.1 | 4, 8p | 12,583,175 | 1 |
| 32 | 22,732,685 | 3 | 677 | 29.4 | 12q, 22q | 8,370,595 | 3 |
| 33 | 16,261,182 | 1 | 451 | 28.2 | 11q | 12,417,884 | 2 |
| 34 | 22,097,801 | 1 | 526 | 23.9 | 12p | 16,301,232 | 2 |
| 35 | 18,484,027 | 4 | 397 | 22.1 | 10p | 10,673,185 | 4 |
| 36 | 5,377,765 | 3 | 64 | 12.8 | 7p | 3,455,596 | 4 |
| X | 36,971,808 | 8 | 687 | 17.2 | X | 16,549,574 | 6 |
∗Denotes novel conserved synteny, not detected by Balmus et al. (2007); comparative information for VicPac2.0.2 is presented in the two far right columns.