Table 14.

Power analysis for pedigree P2. The last five columns contain the proportion of association p-values below a specific significance level for the five association tests and two different MAFs. All results based on 100,000 replicates.

Sample size	MAF	Significance level	FBAT	FBAT-ev	GDT	GDT-PO	PDT
200	0.05	0.05	0.0708	0.0686	0.0862	0.0713	0.0726
		0.01	0.017	0.0146	0.0228	0.0175	0.0139
		0.001	0.0019	0.0012	0.0027	0.0021	0.0012
	0.30	0.05	0.1442	0.1424	0.2161	0.145	0.143
		0.01	0.0456	0.0438	0.0817	0.0476	0.0441
		0.001	0.0079	0.0065	0.0163	0.0084	0.0068
1000	0.05	0.05	0.1596	0.1586	0.2454	0.1606	0.1598
		0.01	0.0537	0.053	0.0964	0.0554	0.0543
		0.001	0.0102	0.0095	0.0208	0.0106	0.01
	0.30	0.05	0.5132	0.5119	0.7471	0.5139	0.513
		0.01	0.279	0.2768	0.5287	0.2839	0.2809
		0.001	0.0961	0.0945	0.2581	0.0986	0.0968