Table 2.
List of SNPs used to identify patient-derived xenografts
| Probe | SNP | GENE | Chr | Functional consequence |
|---|---|---|---|---|
| AMG_mid100 | ||||
| rs11017876 | [A\G] | DOCK1 | 10:127402700 | Intron variant |
| rs1106334 | [C\T] | 8:70100576 | ||
| rs1155741 | [C\T] | ITGA9 | 3:37585621 | Intron variant |
| rs11655512 | [A\G] | LOC339260 | 17:20948422 | Intron variant |
| rs11940551 | [G\T] | 4:27160856 | ||
| rs1210110 | [A\G] | PRDM2 | 1:13770326 | Intron variant |
| rs1364054 | [C\T] | LINC00299 | 2:8038605 | Intron variant |
| rs1528601 | [C\G] | 16:51064516 | ||
| rs161792 | [A\T] | LOC101928166 | 3:152181915 | Intron variant |
| rs17272796 | [C\T] | PLCL2 | 3:17035776 | Intron variant |
| rs242076 | [C\T] | SYN3 - TIMP3 | 22:32833844 | Intron variant |
| rs4775699 | [C\T] | SEMA6D | 15:47581352 | Intron variant |
| rs4793172 | [A\T] | DCAKD | 17:45054112 | Intron variant |
| rs4905366 | [A\G] | 14:95636762 | ||
| rs6603251 | [C\T] | PPP2R3B | Y:359845 | Intron variant |
| rs6734275 | [A\G] | LOC105374785 | 2:67014042 | Intron variant |
| rs685449 | [A\T] | RGS17 | 6:153023396 | Intron variant |
| rs7555566 | [A\G] | KAZN | 1:14478378 | Intron variant |
| rs7584993 | [A\C] | 2:222981224 | ||
| rs7808249 | [A\G] | CROT | 7:87354399 | Intron variant |
| rs9293511 | [C\T] | LOC105379072 | 5:89120537 | Intron variant |
| rs9352613 | [A\G] | 6:78714716 | ||
| rs9572094 | [C\T] | LOC105370159 | 13:34678745 | Intron variant |