Table 3. Stability ranking of 10 RGs determined by GeNorm, NormFinder and BestKeeper.
Rank | geNorm | NormFinder | BestKeeper | ||||
---|---|---|---|---|---|---|---|
Gene | M-value | Gene | S-value | Gene | SD | CV | |
1 | Tbp | 0.0150 | Hprt | 0.0467 | Rps29 | 0.1788 | 0.8372 |
2 | Rps18 | 0.0159 | Rps18 | 0.0533 | Rps18 | 0.1888 | 0.8762 |
3 | Hprt | 0.0155 | Ubc | 0.0574 | Ubc | 0.2002 | 0.9364 |
4 | Sdha | 0.0167 | Sdha | 0.0582 | Rpl13a | 0.2047 | 0.8533 |
5 | Rpl13a | 0.0170 | Rpl13a | 0.0594 | Sdha | 0.2358 | 0.9812 |
6 | Ubc | 0.0174 | Tbp | 0.0611 | Tbp | 0.2375 | 0.8120 |
7 | Rps29 | 0.0189 | Gapdh | 0.0624 | Hprt | 0.2552 | 1.0255 |
8 | Gapdh | 0.0195 | Rps29 | 0.0699 | B2m | 0.2726 | 1.2001 |
9 | B2m | 0.0220 | Actb | 0.0770 | Gapdh | 0.2868 | 1.3808 |
10 | Actb | 0.0231 | B2m | 0.0813 | Actb | 0.3234 | 1.5939 |
Note:
Ranking is depicted in descending order, so that 1 is most stable and 10 is least stable. geNorm calculates an average expression stability (M-value), with a cut-off value of <0.5 for relatively homogenous samples. NormFinder calculates relative expression stability (S-value), also with a cut-off of <0.5. BestKeeper calculates standard deviation (SD) and coefficient of variance (CV), with a SD cut-off of <1.0.