Table 4. Long repeat sequences in the chloroplast genome of 10 Theaceae species.
| Type | Repeat sizes (bp) | Location | Region | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C. oleifera Hainan | C. oleifera | C. luteoflora | C. grandibracteata | C. sinensis | C. leptophylla | C. pubicosta | C. crapnelliana | C. huana | C. danzaiensis | |||
| F | 56 | 56 | 56 | 56 | 56 | 48 | ycf2; ycf2 | IRa | ||||
| P | 56 | 56 | 56 | 56 | 56 | 48 | ycf2; ycf2 | IRa, IRb | ||||
| P | 48 | 48 | 60 | ycf2; ycf2 | IRa, IRb | |||||||
| F | 56 | 48 | 48 | 56 | 56 | 56 | 48 | ycf2; ycf2 | IRb | |||
| P | 48 | IGS (rpl2-trnH; rps19-rpl2) | LSC, IRa | |||||||||
| F | 48 | IGS (rpl2-trnH); rpl2 | LSC, IRb | |||||||||
| F | 47 | IGS (rpl2-trnH) | LSC, IRb | |||||||||
| P | 46 | IGS (petB-petD) | LSC | |||||||||
| P | 46 | 46 | 42 | 42 | 42 | 42 | 46 | 46 | 46 | petD; petD | LSC | |
| F | 42 | 42 | 41 | 42 | 42 | 42 | 42 | 42 | 42 | 42 | IGS (rps12-trnV); Intron (ndhA) | IRa, SSC |
| P | 42 | 42 | 41 | 42 | 42 | 42 | 42 | 42 | 42 | 42 | IGS (trnV-rps12); Intron (ndhA) | IRb, SSC |
| F | 38 | 38 | 38 | 38 | 38 | 38 | 38 | 38 | 38 | 30 | ycf2; ycf2 | IRa |
| P | 38 | 38 | 38 | 38 | 38 | 38 | 38 | ycf2; ycf2 | IRa, IRb | |||
| F | 38 | 38 | 30 | 30 | 38 | 38 | 38 | 38 | 30 | ycf2; ycf2 | IRb | |
| F | 38 | IGS (trnL-ycf2) | IRb | |||||||||
| P | 38 | ycf2; ycf2 | IRb | |||||||||
| P | 38 | ycf2; IGS (trnL-ycf2) | IRa, IRb | |||||||||
| F | 34 | IGS (rrn4.5-rrn5) | IRa | |||||||||
| P | 34 | IGS (rrn4.5-rrn5; rrn5-rrn4.5) | IRa, IRb | |||||||||
| F | 34 | IGS (rrn5-rrn4.5) | IRb | |||||||||
| R | 32 | IGS (atpB-rbcL) | LSC | |||||||||
| R | 31 | IGS (atpB-rbcL) | LSC | |||||||||
| F | 31 | IGS (atpB-rbcL) | LSC | |||||||||
| F | 34 | IGS (petA-psbJ) | LSC | |||||||||
| P | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 | IGS (psbI-trnS; trnS-rps4) | LSC |
| R | 30 | IGS (atpB-rbcL) | LSC | |||||||||
| F | 30 | IGS (atpB-rbcL) | LSC | |||||||||
| P | 30 | 30 | 30 | ycf2; ycf2 | IRa, IRb | |||||||