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. Author manuscript; available in PMC: 2019 Jun 30.
Published in final edited form as: Infect Genet Evol. 2018 Oct 25;67:23–32. doi: 10.1016/j.meegid.2018.10.018

Table 2.

List of genes and primers used for qPCR analysis.

Gene Gene type Primers Tm (°C) Amplicon size
gdh Reference F: 5′- TGTCGGTGAGCTGCCTAAAG −3′ 60.0 °C 59.8°C 120 pb
R: 5′- AAAGCGGTTTCAGCTAACGC −3′
pyrC Reference F: 5′- TCGGTAGTGAAACGGCCTTC −3′ 60.0 °C 59.4°C 106 pb
R: 5′- ATTTCTGCCGGTTTCACTGC −3′
gyrA Reference F: 5′- AGGTGTTCGTGGAATCCGTC −3′ 60.0 °C 60.6°C 148 pb
R: 5′- ACCGCCACGTCCTTTAACTG −3′
rpsJ Target F: 5′- AAGAACTGGAGCTGACGTATC −3′ 57.5 °C 58.7°C 80 pb
R: 5′- TATGAGTCGCACGAACAACTG −3′
tetM Target F: 5′- TGTATCACCGCTTCCGTTGG −3′ 60.4 °C 60.0°C 114 pb
R: 5′- TCGCAACCATAGCGTATCCC −3′
QP83_08660 Target F: 5′- AAAACGGTCAGCAAAGAGGC −3′ 59.3°C 60.1°C 121 pb
R: 5′- GGTACTCCCCGTTTTCTCCG −3′
QP83_01175 Target F: 5′- CGTTTCGACGCATGTTTTAC −3′ R: 5′- GCATTGTAGCAGTTTTAGGC −3′ 56.4 °C 56.8°C 126 pb
QP83_14295 Target F: 5′- CCGTCGGAACACTTACTGTAG-3′ 56.0 °C 59.6°C 98 pb
R: 5′- GCCAAGCTTTACTACACGTCG −3′