Table 2.
List of genes and primers used for qPCR analysis.
| Gene | Gene type | Primers | Tm (°C) | Amplicon size |
|---|---|---|---|---|
| gdh | Reference | F: 5′- TGTCGGTGAGCTGCCTAAAG −3′ | 60.0 °C 59.8°C | 120 pb |
| R: 5′- AAAGCGGTTTCAGCTAACGC −3′ | ||||
| pyrC | Reference | F: 5′- TCGGTAGTGAAACGGCCTTC −3′ | 60.0 °C 59.4°C | 106 pb |
| R: 5′- ATTTCTGCCGGTTTCACTGC −3′ | ||||
| gyrA | Reference | F: 5′- AGGTGTTCGTGGAATCCGTC −3′ | 60.0 °C 60.6°C | 148 pb |
| R: 5′- ACCGCCACGTCCTTTAACTG −3′ | ||||
| rpsJ | Target | F: 5′- AAGAACTGGAGCTGACGTATC −3′ | 57.5 °C 58.7°C | 80 pb |
| R: 5′- TATGAGTCGCACGAACAACTG −3′ | ||||
| tetM | Target | F: 5′- TGTATCACCGCTTCCGTTGG −3′ | 60.4 °C 60.0°C | 114 pb |
| R: 5′- TCGCAACCATAGCGTATCCC −3′ | ||||
| QP83_08660 | Target | F: 5′- AAAACGGTCAGCAAAGAGGC −3′ | 59.3°C 60.1°C | 121 pb |
| R: 5′- GGTACTCCCCGTTTTCTCCG −3′ | ||||
| QP83_01175 | Target | F: 5′- CGTTTCGACGCATGTTTTAC −3′ R: 5′- GCATTGTAGCAGTTTTAGGC −3′ | 56.4 °C 56.8°C | 126 pb |
| QP83_14295 | Target | F: 5′- CCGTCGGAACACTTACTGTAG-3′ | 56.0 °C 59.6°C | 98 pb |
| R: 5′- GCCAAGCTTTACTACACGTCG −3′ |