ABA	Abscisic acid
BLAST	Basic local alignment search tool
COG	Clusters of orthologous groups
DEG	Differentially expressed gene
EST	Expressed sequence tag
FDR	False discovery rate
GO	Gene ontology
KEGG	Kyoto Encyclopedia of Genes and Genomes Pathway
NCBI	National Center for Biotechnology Information
qRT-PCR	Real-time quantitative reverse transcription polymerase chain reaction
RPKM	Number of reads per kilobase per million clean reads
SAM	Shoot apical meristem
GCN	Gene co-expression network
HRR	Highest reciprocal rank
MCL	Markov cluster algorithm
FW	Fresh weight
ZR	Zeatin riboside
JA	Jasmonic acid
IAA	Indole-3-acetic acid
GA3	Gibberellic acid 3
ELISA	Enzyme-linked immuno sorbent assay
Contig###	First_Contig###
contig_###	1-LWQ_no_rRNA.1_(paired)_contig_###