Table 4.
The results of ARG analysis based on genome sequences data.
| Name | Accession No. | RGI Criteria | Perfect Hits | Strict Hits | Loose Hits |
|---|---|---|---|---|---|
|
W. cibaria CMU, complete genome |
CP013936 | Perfect, Strict, complete genes only | 0 | 0 | 0 |
|
W. cibaria CMS1, complete genome |
CP022606 | 0 | 0 | 0 | |
|
L. rhamnosus GG, complete genome |
013198 | 0 | 0 | 0 | |
|
E. faecalis ATCC 29212, complete genome |
CP008816 | 0 | 2 | 0 | |
| RGI Criteria * | Strict | Strict | |||
| ARO | dfrE | tet(W/N/W) | |||
| Detection Criteria | Protein homologous model | Protein homologous model | |||
| AMR Gene family | Trimethoprim resistant dihydrofolate reductase dfr | Tetracycline-ribosomal protection protein | |||
| Drug Class | Diaminopyrimidine antibiotic | Tetracycline antibiotic | |||
| Resistance mechanism | Antibiotic target replacement | Antibiotic target protection | |||
| % Identity of Matching Region | 98.78 | 68.65 | |||
| % Length of Reference Sequence | 100.00 | 100.00 | |||
* The results of the RGI criteria for the complete genome of E. faecalis ATCC 29212 are presented. Perfect hits, 100% identical to the reference sequence along its entire length; strict hits, likely homologs of AMR genes; and loose hits, hits with weak similarity. ARO, antibiotic resistance ontology; AMR, antimicrobial resistance.