Table 1.
Pop ID | Variant Sites | % Polymorphic Loci | Num Indv | H O | H E | Pi | F IS | NeLD (95% CI) |
---|---|---|---|---|---|---|---|---|
Dandong | 13,681 | 70.2361 | 20.3856 | 0.1231 | 0.1175 | 0.1205 | –0.0109 | Infinite (∞) |
Dalian | 13,681 | 72.0050 | 23.4955 | 0.1304 | 0.127 | 0.1298 | –0.0019 | 2591.1 (2062.7–3481.8) |
Qinhuangdao | 13,681 | 67.9629 | 20.1335 | 0.1543 | 0.1382 | 0.1418 | –0.0439 | 32.0 (31.8–32.2) |
Dongying | 13,681 | 74.4609 | 21.5243 | 0.1350 | 0.1298 | 0.1329 | –0.0084 | 512.8 (485.1–543.8) |
Weifang | 13,681 | 72.2973 | 20.8344 | 0.1374 | 0.1292 | 0.1324 | –0.0186 | 313.9 (301.7–327.1) |
Rongcheng | 13,681 | 56.7356 | 20.8467 | 0.1192 | 0.1120 | 0.1148 | –0.0152 | 23.8 (23.7–23.9) |
Wendeng | 13,681 | 58.4753 | 21.4057 | 0.1310 | 0.1167 | 0.1196 | –0.0414 | 6.8 (6.8–6.9) |
Qingdao | 13,681 | 46.6852 | 20.5603 | 0.1135 | 0.1039 | 0.1066 | –0.0236 | 100.3 (98.3–102.4) |
Fuyang | 13,681 | 57.0865 | 20.5565 | 0.1364 | 0.1313 | 0.1346 | –0.0091 | 1766.0 (1391.6–2414.6) |
Note.—Variant Sites, number of total SNPs; % Polymorphic Loci, proportion of SNPs in this populations; Num Indv, number of genotyped individuals averaged over all SNPs; HO, observed heterozygosity; HE, expected heterozygosity; Pi, nucleotide diversity; FIS, inbreeding coefficient of individuals relative to the subpopulation; NeLD, effective populations size estimated based on LD method.