Table 6. Average pairwise p-distances (APD) and average number of mutations (ANM, transitions + transversions) within TPA, within TPE/TEN, and between TPA and TPE/TEN, for whole complete genomes, for selected 54 genomic loci, and for complete genomes without selected 54 loci.
| Whole genomes APD (ANM) |
54 selected loci (S2 Table) APD (ANM) |
Genomes without 54 loci APD (ANM) |
||||
|---|---|---|---|---|---|---|
| TP subspecies | Within Group |
Between groups |
Within group |
Between groups |
Within group |
Between Groups |
| TPA | 0.000415a (472.7) |
TPA-TPE/TEN 0.001908 (2171.4) |
0.004200 (361.8) |
TPA-TPE/TEN 0.015227 (1297.0) |
0.000105a (110.9) |
TPA-TPE/TEN 0.000831 (874.4) |
| TPE/TEN | 0.000455a (517.4) |
0.003842 (325.7) |
0.000182a (191.7) |
|||
aStatistically significant difference for genetic distance within TPA strains compared to TPE/TEN strains when complete genomes and genomes without selected 54 genes were compared (The Fisher exact test, p = 0.0008).