Table 1.
Independent benchmarking of tertiary structure predictions with CAMEO 3D data. Performance results for 3 months of data (26 October 2018 to 19 January 2019) are shown for all (250) targets and all (17) public methods. Data are sorted by average lDDT score for all targets. The scores for the IntFOLD-TS methods are indicated in bold. Data are taken from the CAMEO 3D front page http://www.cameo3d.org/ on 19 January 2019.
| Average lDDT | Average lDDT-BS | |||
|---|---|---|---|---|
| Server name | All targets | Modelled targets | All targets | Modelled targets |
| IntFOLD5-TS | 68.04 | 68.04 | 70.94 | 70.94 |
| RaptorX | 67.38 | 67.38 | 68.45 | 68.45 |
| Robetta | 65.51 | 69.1 | 63.24 | 66.11 |
| HHpredB | 64.06 | 64.06 | 68.59 | 68.59 |
| SWISS-MODEL | 62.22 | 62.97 | 64.85 | 65.56 |
| IntFOLD4-TS | 55.02 | 68.1 | 58.12 | 73.25 |
| SPARKS-X | 54.63 | 60.7 | 58.07 | 66.78 |
| M4T-SMOTIF-TF | 54.45 | 60.77 | 62.92 | 65.78 |
| IntFOLD3-TS | 53.75 | 66.85 | 55.76 | 69.33 |
| PRIMO | 51.74 | 57.48 | 58.32 | 64.65 |
| PRIMO_BST_CL | 51.71 | 57.45 | 58.32 | 64.65 |
| NaiveBLAST | 50.34 | 55.69 | 60.08 | 62.11 |
| PRIMO_BST_3D | 49.83 | 55.86 | 57.99 | 63.51 |
| PRIMO_HHS_3D | 48.27 | 55.87 | 56.49 | 62.62 |
| PRIMO_HHS_CL | 46.73 | 56.43 | 55.55 | 61.58 |
| Princeton_TEMPLATE | 24.46 | 54.61 | 25.63 | 58.95 |
| Phyre2 | 24.06 | 52.77 | 29.27 | 67.31 |