Table 3.
Data resources available through EBI Search in 2019
| Category | Data resources |
|---|---|
| Genomes and metagenomes | Ensembl Genomes, Ensembl, HGNC, DGVa, EGA, LRG, WormBase ParaSite, MGnify |
| Nucleotide sequences | ENA, RNAcentral, Rfam, NRNL1, NRNL2, IMGT/HLA, IPD-KIR, IPD-MHC |
| Protein sequences | UniProtKB, UniParc, UniRef, EPO, JPO, KIPO, USPTO, NRPL1, NRPL2 |
| Macromolecular structures | PDBe, EMDB |
| Bioactive molecules | ChEBI, ChEMBL, Ligands |
| Gene expression | ArrayExpress, Expression Atlases, GEO, dbGaP |
| Molecular interactions | IntAct |
| Reactions, pathways | Rhea, Reactome, BioModels, MetaboLights, MetabolomeExpress, Metabolomics Workbench |
| Protein families | InterPro, TreeFam, Pfam, MEROPS, GPCRDB |
| Protein expression data | PRIDE, GNPS, GPMdb, MassIVE, PeptideAtlas, LINCS, Paxdb, jPOST |
| Enzymes | IntEnz, Enzyme Portal |
| Literature | Europe PMC, Patent families |
| Samples and ontologies | Taxonomy, GO, EFO, SBO, MESH, BioSamples, Identifiers.org registry, ORCID data claims, OLS, bio.tools |
| Diseases | OMIM, Human diseases |