Table 1.
Summary of model organism web-based enrichment analysis tools
Library categories | Results format | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Tool | Interactive | Unique result URL | API | Ortholog conversion | User background upload | Model organisms | Libraries | Diseases | Ontologies | Pathways | Text-mining | Transcription | Bar graph | Plot | Table |
AmiGO | + | + | 104 | 9 | + | + | |||||||||
DAVID | + | + | + | 65 000 | 68 | + | + | + | + | + | + | + | |||
g:Profiler | + | + | + | + | + | 467 | 12 | + | + | + | + | + | + | ||
KOBAS | + | + | + | 7 | 9 | + | + | + | + | ||||||
LRpath | + | + | 7 | 16 | + | + | + | + | + | + | + | ||||
Lynx | + | + | + | 1 | 16 | + | + | + | + | + | + | ||||
modEnrichr | + | + | + | + | 6 | 260 | + | + | + | + | + | + | + | ||
modPhEA | + | + | + | 6 | 6 | + | + | + | |||||||
STRING | + | + | + | 5090 | 11 | + | + | + | + | + | + | ||||
ToppFun | + | + | + | 1 | 99 | + | + | + | + | + | + | + | |||
WebGestalt | + | + | 12 | 192 | + | + | + | + | + | + | + | ||||
WormBase | + | 1 | 3 | + | + | + |