Table 1.
All Transcripts | Canonical Transcripts | |||||||
---|---|---|---|---|---|---|---|---|
Organism | Genome assembly | Genome regions | # Genes | # Transcripts | # Splice sites | # Proteins | # Genes /transcripts /proteins | # Splice sites |
Human | GRCh37 | Chr1–22, X, Y, MT | 35 091 | 138 613 | 2 018 124 | 95 304 | 20 676 | 413 814 |
Human | GRCh38 | Chr1–22, X, Y, MT, 329 alternate loci | 36 100 | 155 341 | 2 259 292 | 107 498 | 20 528 | 421 390 |
Chimpanzee | Pan-tro-3.0 | Chr1–22, X, Y, MT | 17 381 | 41 504 | 947 134 | 41 468 | 17 348 | 373 978 |
Mouse | GRCm38 | Chr1–19, X, Y, MT | 36 148 | 94 462 | 1 350 332 | 65 679 | 22 504 | 420 830 |
Rat | Rnor_6.0 | Chr1–20, X, Y, MT | 23 671 | 31 110 | 588 376 | 28 897 | 21 935 | 404 576 |
Cow | ARS-UCD1.2 | Chr1–29, X, MT | 16 515 | 31 214 | 785 250 | 31 188 | 16 489 | 353 780 |
Chicken | GRCg6a | Chr1–33, W, Z, MT | 12 303 | 22 158 | 573 360 | 22 158 | 12 303 | 278 736 |
Lizard | AnoCar2.0 | Chr1–6, MT | 6105 | 6321 | 155 556 | 6321 | 6105 | 149 500 |
Zebrafish | GRCz11 | Chr1–25, MT | 25 864 | 49 308 | 908 190 | 45 633 | 24 568 | 483 174 |
Fruitfly | BDGP6 | Chr2–4, X, Y, MT | 14 226 | 30 804 | 363 118 | 30 478 | 13 926 | 119 752 |
Arabidopsis | TAIR10 | Chr1–5, MT | 12 702 | 23 376 | 336 118 | 23 376 | 12 702 | 159 070 |
Rice | IRGSP-1.0 | Chr1–12, MT | 2779 | 12 455 | 134 960 | 12 452 | 2 776 | 36 886 |