Table 1.
Transcription factor target gene set libraries included in ChEA3. The TF coverage heatmap spans the 1634 human site-specific TFs in (1) with 1632 of those factors covered by ChEA3
| Library | Unique TFs | Unique TF Interactions | Gene Sets |
|---|---|---|---|
| ARCHS4 Coexpression | 1628 | 480 504 | 1628 human |
| ENCODE ChIP-seq | 118 | 392 667 | 552 (470 human, 82 mouse) |
| Enrichr Queries | 1404 | 409 279 | 1404 (unknown species) |
| GTEx Coexpression | 1607 | 468 672 | 1607 human |
| Literature ChIP-seq | 164 | 340 547 | 307 (138 human, 164 mouse, 5 rat) |
| ReMap ChIP-seq | 297 | 417 025 | 297 human |