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. 2019 May 20;47(W1):W456–W461. doi: 10.1093/nar/gkz416

Figure 3.

Figure 3.

MERMAID server output. The upper panel shows the trimeric protein structure of the E. coli OmpF porin (PDB accession code: 3POX) in (A) atomistic description, (B) initial coarse-grained structure embedded in a coarse-grained membrane, (C) coarse-grained structure from the last frame of production run. A list of the analysis performed on the CG simulation (D). (E–H) shows the plots for temperature, pressure, system density, and system volume respectively.