Table 2.
SNP | Chr | BPb | Locus | EAb | NEAb | EAFb | Beta | SE | P | Directionc | HetPVald | N | HetISq |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Fasting glucose loci | |||||||||||||
rs6943153 | 7 | 50759073 | GRB10 | T | C | 0.30 | −0.044 | 0.01 | 0.002 | -------+- | 0.4257 | 13,800 | 1 |
rs11619319 | 13 | 27385599 | PDX1 | A | G | 0.77 | 0.039 | 0.02 | 0.011 | +++++−+++ | 0.6785 | 13,807 | 0 |
Type 2 diabetes loci | |||||||||||||
rs10965248e | 9 | 22122878 | CDKN2A/B | A | G | 0.18 | −0.040 | 0.02 | 0.019 | ?--+--+-- | 0.06878 | 12,523 | 47 |
HbA1c loci | |||||||||||||
rs2073285 | 17 | 73628956 | TMC6 | T | C | 0.20 | 0.079 | 0.03 | 0.002 | +?++?+?+? | 0.05396 | 5,098 | 57 |
rs4783565 | 16 | 67307691 | CDH3 | A | G | 0.32 | 0.043 | 0.02 | 0.006 | ?++++++?+ | 0.4491 | 11,356 | 0 |
rs579459 | 9 | 135143989 | ABO | T | C | 0.78 | −0.041 | 0.02 | 0.008 | ------+-+ | 0.2827 | 13,779 | 18 |
rs11619319 | 13 | 27385599 | PDX1 | A | G | 0.77 | 0.039 | 0.02 | 0.011 | +++++−+++ | 0.6785 | 13,807 | 0 |
rs10823343 | 10 | 70761019 | HK1 | A | G | 0.75 | −0.037 | 0.02 | 0.039 | -+-----?? | 0.3766 | 8,809 | 6.7 |
aScott et al.13, Scott et al.15, Wheeler et al.16.
bBP:Physical Position (base pair) in build 36. EA: effect allele, NEA: non-effect allele, EAF: effect allele frequency.
cThe sign of EA effect and the order of Cohorts are BHS, COLAUS, DESIR, ERGO, FHS, HBCS, KORA, PREVEND, SARDIANA.
dHetPVal: P-value for testing for heterogeneity.
eUsing proxy SNP rs10965250 (r2 = 0.97 with rs10965248).