Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2019 Jul 2;20:539. doi: 10.1186/s12864-019-5926-4

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

PMC Copyright notice

Fig. 2 — Performance of lncDIFF, DESeq2, edgeR and limma on TCGA HNSC matched tumor-normal samples. (A) Venn diagram for DE genes identified by each method. (B) TPR and FPR for each method based on surrogate DE gene sets SS1-SS3 defined by log2 fold change > 0.5, 1.0, 1.5. (C)-(E) Boxplots for tumor vs. normal log2 RPKM of genes detected as positive by one method and negative by another